SMTL ID : 2jmj.1

NMR solution structure of the PHD domain from the yeast YNG1 protein in complex with H3(1-9)K4me3 peptide

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR- ALA- ARG- LYS: Histone H3(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR-ALA-ARG-LYS.1: 21 residues within 4Å: Chain A: E.26, Y.28, S.35, Y.36, G.37, P.38, M.39, V.40, A.41, D.43, E.50, W.51, Y.54, G.55, L.59, K.60, Q.61, A.62, G.65, K.66, W.67 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:M.39, A:D.43, A:W.51 Hydrogen bonds: A:M.39, A:M.39, A:A.41, A:D.43, A:D.43, A:Q.61 Salt bridges: A:E.50 pi-Cation interactions: A:W.51, A:W.51

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 9 residues within 4Å: Chain A: C.42, N.44, C.47, P.48, F.49, F.52, C.69, S.70, C.73 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.47, A:C.69, A:C.73 ZN.3: 6 residues within 4Å: Chain A: C.29, C.31, N.33, Y.36, H.53, C.56 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.29, A:C.31, A:C.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taverna, S.D. et al., Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol.Cell (2006)

Release Date

2007-07-03

Peptides

Protein YNG1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein YNG1

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