SMTL ID : 2jnp.1

Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of N-isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.64, D.66, H.79, Y.81, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92 ZN.2: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: NGH.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.71, G.72, G.74, V.76, L.77, D.94, E.97 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:D.94, A:E.97 CA.4: 7 residues within 4Å: Chain A: D.54, I.55, M.56, G.86, N.88, G.89, D.90 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.54, A:G.86, A:N.88, A:D.90, A:D.90

1 x NGH: N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID(Non-covalent)

NGH.5: 16 residues within 4Å: Chain A: N.75, V.76, L.77, A.78, H.79, A.80, L.110, V.111, H.114, E.115, H.118, H.124, L.131, Y.133, P.134 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.111, A:H.114 Hydrogen bonds: A:L.77, A:A.78, A:A.78, A:A.80 pi-Cation interactions: A:H.114

Links

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Citation

Alcaraz, L.A. et al., Matrix metalloproteinase-inhibitor interaction: the solution structure of the catalytic domain of human matrix metalloproteinase-3 with different inhibitors. J.Biol.Inorg.Chem. (2007)

Release Date

2007-12-11

Peptides

Matrix metalloproteinase-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrix metalloproteinase-3

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