SMTL ID : 2jt6.1

Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of 3-4'-cyanobyphenyl-4-yloxy)-n-hdydroxypropionamide (MMP-3 inhibitor VII)

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.114, E.115, H.118, H.124 Ligands: JT6.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:D.66, A:D.66, A:H.79, A:H.92

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.71, G.72, G.74, V.76, L.77, D.94, E.97 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.71, A:D.71, A:G.72, A:G.74, A:V.76 CA.4: 8 residues within 4Å: Chain A: E.52, A.53, D.54, M.56, G.86, I.87, N.88, D.90 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.52, A:G.86, A:N.88, A:D.90, A:D.90

1 x JT6: 3-[(4'-cyanobiphenyl-4-yl)oxy]-N-hydroxypropanamide(Non-covalent)

JT6.5: 20 residues within 4Å: Chain A: L.77, A.78, H.79, L.110, V.111, H.114, E.115, H.118, H.124, T.128, E.129, A.130, L.131, Y.133, P.134, L.135, Y.136, H.137, F.145 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.77, A:L.110, A:Y.133, A:Y.136 Hydrogen bonds: A:A.78, A:E.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alcaraz, L.A. et al., Matrix metalloproteinase-inhibitor interaction: the solution structure of the catalytic domain of human matrix metalloproteinase-3 with different inhibitors. J.Biol.Inorg.Chem. (2007)

Release Date

2008-02-19

Peptides

Stromelysin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stromelysin-1

Related Entries With Identical Sequence