SMTL ID : 2ju4.1

NMR structure of the gamma subunit of cGMP phosphodiesterase

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

10 x RCY: (3'R)-1'-oxyl-2',2',5',5'-tetramethyl-1,3'-bipyrrolidine-2,5-dione(Covalent)

RCY.1: 4 residues within 4Å: Chain A: C.10, S.12, A.13, T.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.12, A:A.13 RCY.2: 4 residues within 4Å: Chain A: V.16, M.17, G.18, C.21 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.16 RCY.3: 4 residues within 4Å: Chain A: C.30, K.31, R.33, G.56 No protein-ligand interaction detected (PLIP) RCY.4: 10 residues within 4Å: Chain A: R.33, C.38, Q.48, C.50, G.51, D.52, D.53, P.55, G.59 Ligands: RCY.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.52, A:P.55 Hydrogen bonds: A:D.52, A:D.52 Salt bridges: A:D.52 RCY.5: 7 residues within 4Å: Chain A: C.38, Q.48, G.49, C.50, G.51, D.52 Ligands: RCY.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.51 RCY.6: 6 residues within 4Å: Chain A: P.55, G.56, C.60, G.61, I.64 Ligands: RCY.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.55 Hydrogen bonds: A:G.61 RCY.7: 4 residues within 4Å: Chain A: I.64, C.68, W.70 Ligands: RCY.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.64 RCY.8: 7 residues within 4Å: Chain A: P.69, W.70, C.73, A.82, Q.83 Ligands: RCY.9, RCY.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.69, A:A.82 RCY.9: 8 residues within 4Å: Chain A: C.76, L.78, H.79, E.80, A.82, Q.83 Ligands: RCY.8, RCY.10 No protein-ligand interaction detected (PLIP) RCY.10: 5 residues within 4Å: Chain A: A.82, G.85, C.87 Ligands: RCY.8, RCY.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, J. et al., Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2007-10-16

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma