SMTL ID : 2klh.1

NMR Structure of RCL in complex with GMP

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

homo-dimer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 22 residues within 4Å: Chain A: Y.6, F.7, C.8, G.9, S.10, I.11, R.12, Y.21, T.36, H.38, V.39, I.58, Q.61, A.62, W.65, S.80, G.82, V.83, E.86 Chain B: S.110, A.111, M.112 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.6, A:G.9, A:S.10, A:S.10, A:I.11, A:R.12, A:Y.21, A:Y.21, A:Y.21, A:H.38, A:Q.61, A:G.82, A:V.83, B:A.111, B:M.112 pi-Stacking: A:H.38, A:H.38 pi-Cation interactions: A:H.38 5GP.2: 22 residues within 4Å: Chain A: S.110, A.111, M.112 Chain B: Y.6, F.7, C.8, G.9, S.10, I.11, R.12, Y.21, T.36, H.38, V.39, I.58, Q.61, A.62, W.65, S.80, G.82, V.83, E.86 18 PLIP interactions: 2 interactions with chain A, 16 interactions with chain B Hydrogen bonds: A:A.111, A:M.112, B:Y.6, B:G.9, B:S.10, B:S.10, B:I.11, B:R.12, B:Y.21, B:Y.21, B:Y.21, B:H.38, B:Q.61, B:G.82, B:V.83 pi-Stacking: B:H.38, B:H.38 pi-Cation interactions: B:H.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Structural characterization of the mammalian deoxynucleotide N-hydrolase Rcl and its stabilizing interactions with two inhibitors. J.Mol.Biol. (2009)

Release Date

2009-10-20

Peptides

c-Myc-responsive protein Rcl: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

c-Myc-responsive protein Rcl