SMTL ID : 2kqd.1

First PBZ domain of human APLF protein in complex with ribofuranosyladenosine

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.17, C.23, H.30, F.34, H.36 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.17, A:C.23, A:H.30, A:H.36

1 x ADN: ADENOSINE(Non-covalent)

ADN.2: 7 residues within 4Å: Chain A: M.18, Y.19, N.22, C.23, Y.24, R.25 Ligands: RIB.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.22, A:Y.24 pi-Stacking: A:Y.19, A:Y.19

1 x RIB: alpha-D-ribofuranose(Non-covalent)

RIB.3: 5 residues within 4Å: Chain A: M.18, Y.19, Y.24, R.25 Ligands: ADN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eustermann, S. et al., Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose). Nat.Struct.Mol.Biol. (2010)

Release Date

2010-01-19

Peptides

Aprataxin and PNK-like factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aprataxin and PNK-like factor

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