SMTL ID : 2ksq.1

The myristoylated yeast ARF1 in a GTP and bicelle bound conformation

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

5 x MTN: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate(Non-covalent)

MTN.1: 1 residues within 4Å: Chain A: C.55 No protein-ligand interaction detected (PLIP) MTN.2: 1 residues within 4Å: Chain A: C.59 No protein-ligand interaction detected (PLIP) MTN.3: 2 residues within 4Å: Chain A: Y.82, C.83 No protein-ligand interaction detected (PLIP) MTN.4: 5 residues within 4Å: Chain A: D.114, E.115, L.116, C.117, N.118 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.114 MTN.5: 5 residues within 4Å: Chain A: N.175, C.176, K.178, S.180, T.181 No protein-ligand interaction detected (PLIP)

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.6: 23 residues within 4Å: Chain A: L.25, D.26, G.27, A.28, G.29, K.30, T.31, T.32, T.45, I.46, P.47, T.48, G.69, G.70, Q.71, V.91, N.126, K.127, D.129, L.130, C.159, A.160, T.161 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.29, A:K.30, A:T.31, A:T.31, A:T.31, A:T.32, A:T.48, A:T.48, A:G.70, A:N.126, A:K.127, A:K.127, A:A.160, A:T.161 Salt bridges: A:K.30, A:K.30, A:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Dynamic structure of membrane-anchored Arf*GTP. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-07-07

Peptides

ADP-ribosylation factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosylation factor 1