SMTL ID : 2kzz.1

KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x DA- DC- DG: DNA (5'-D(*GP*CP*TP*T*AP*CP*G)-3')(Non-covalent)

DA-DC-DG.1: 18 residues within 4Å: Chain A: D.32, T.33, E.34, T.35, L.38, Q.96, N.97, Y.100, D.134, M.135, F.150, E.151, Q.160, F.163, Y.174, D.178 Ligands: ZN.2, ZN.3 Protein-ligand interaction information (PLIP) not available

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: D.32, T.33, D.101 Ligands: DA-DC-DG.1, DA-DC-DG.1, ZN.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.32 ZN.3: 6 residues within 4Å: Chain A: D.32, E.34, Y.174, D.178 Ligands: DA-DC-DG.1, ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.32, A:E.34, A:D.178 ZN.4: 3 residues within 4Å: Chain A: L.500, Y.501, L.502 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.501, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, C.A. et al., Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli. Biochemistry (1999)

Release Date

1999-12-14

Peptides

PROTEIN (DNA POLYMERASE I): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (DNA POLYMERASE I)

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