SMTL ID : 2l4l.1

Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x DC- DT- DG- DG: 5'-D(*CP*TP*GP*G)-3'(Non-covalent)

DC-DT-DG-DG.1: 15 residues within 4Å: Chain A: K.1, V.3, F.6, T.14, R.16, R.22, K.23, K.24, G.25, C.26, W.27, K.28, Q.35, M.36, K.37 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: C.5, C.8, G.9, K.10, H.13, A.15, C.18 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:H.13, A:C.18 ZN.3: 6 residues within 4Å: Chain A: C.26, C.29, G.30, K.31, H.34, C.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.29, A:H.34, A:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bazzi, A. et al., Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC. Nucleic Acids Res. (2011)

Release Date

2010-12-08

Peptides

HIV-1 nucleocapsid protein NCp7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HIV-1 nucleocapsid protein NCp7