SMTL ID : 2l65.1

HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x DAG- EMP: 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose(Non-covalent)

DAG-EMP.1: 3 residues within 4Å: Chain A: F.86 Ligands: DSR.2, MTC.5 No protein-ligand interaction detected (PLIP)

1 x DSR: 2,6-dideoxy-4-thio-beta-D-allopyranose(Non-covalent)

DSR.2: 6 residues within 4Å: Chain A: N.84, G.85, F.86, R.88 Ligands: DAG-EMP.1, HIB.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.85

1 x HIB: 4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID(Non-covalent)

HIB.3: 6 residues within 4Å: Chain A: H.63, T.64, F.65, M.133 Ligands: DSR.2, MRP.4 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:H.63

1 x MRP: 3-O-methyl-alpha-L-rhamnopyranose(Non-covalent)

MRP.4: 8 residues within 4Å: Chain A: N.33, F.65, G.132, M.133, K.135, G.136, W.137 Ligands: HIB.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.65 Hydrogen bonds: A:W.137

1 x MTC: [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER(Non-covalent)

MTC.5: 4 residues within 4Å: Chain A: F.86, G.87 Ligands: DAG-EMP.1, DAG-EMP.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S. et al., Structural insight into the self-sacrifice mechanism of enediyne resistance. Acs Chem.Biol. (2006)

Release Date

2011-03-02

Peptides

CalC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CalC

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