SMTL ID : 2l74.1

Solution structure of the PilZ domain protein PA4608 complex with c-di-GMP identifies charge clustering as molecular readout

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 19 residues within 4Å: Chain A: R.28, R.29, R.30, R.33, D.55, V.56, S.57, H.59, G.60, I.61, L.62, A.96, W.97, R.99, G.104, F.105, E.106, C.107 Ligands: C2E.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.28, A:R.28, A:R.29, A:R.29, A:R.30, A:R.33, A:V.56, A:W.97, A:F.105 Salt bridges: A:R.30, A:D.55 pi-Cation interactions: A:R.28 C2E.2: 13 residues within 4Å: Chain A: H.25, D.26, E.27, R.28, R.29, F.31, H.32, R.33, L.62, W.97, R.99, L.102 Ligands: C2E.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.28, A:R.28, A:R.28, A:R.29, A:R.29, A:R.29, A:R.29, A:R.33, A:R.33, A:W.97 Salt bridges: A:R.28 pi-Stacking: A:W.97 pi-Cation interactions: A:R.29, A:R.29, A:W.97

Links

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Citation

Habazettl, J. et al., Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout. J.Biol.Chem. (2011)

Release Date

2011-02-09

Peptides

Putative uncharacterized protein PA4608: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein PA4608