SMTL ID : 2li8.1

The solution structure of the Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x A- G- G- A- G- A- U: RNA (5'-R(*AP*GP*GP*AP*GP*AP*U)-3')(Non-covalent)

A-G-G-A-G-A-U.1: 24 residues within 4Å: Chain A: M.17, Q.18, K.19, R.20, R.21, S.22, K.23, D.25, R.26, C.27, Y.28, H.36, A.37, K.38, K.47, K.48, C.49, H.50, F.51, M.58, V.59, A.60, K.65, G.74 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: C.27, N.29, C.30, G.31, G.32, H.35, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.27, A:C.30, A:H.35, A:C.40 ZN.3: 8 residues within 4Å: Chain A: C.49, F.51, C.52, S.54, H.57, V.59, C.62, P.63 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.49, A:C.52, A:H.57, A:C.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loughlin, F.E. et al., Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-12-07

Peptides

Protein lin-28 homolog A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein lin-28 homolog A