SMTL ID : 2m3z.1

NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.15, N.17, C.18, H.23, C.28 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.15, A:C.18, A:H.23, A:C.28 ZN.2: 5 residues within 4Å: Chain A: C.36, K.38, C.39, H.44, C.49 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:C.39, A:H.44, A:C.49

2 x 1HF: (3E)-3-{(2Z)-[(5Z)-5-(furan-2-ylmethylidene)-4-oxo-1,3-thiazolidin-2-ylidene]hydrazinylidene}-2-oxo-2,3-dihydro-1H-indole-5-sulfonic acid(Non-covalent)

1HF.3: 14 residues within 4Å: Chain A: K.3, N.8, Q.9, V.13, K.14, C.15, F.16, I.24, A.25, K.26, R.32, W.37, M.46 Ligands: 1HF.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.13, A:F.16, A:F.16 Hydrogen bonds: A:Q.9, A:K.14, A:F.16, A:A.25 Salt bridges: A:K.3 pi-Stacking: A:F.16 1HF.4: 10 residues within 4Å: Chain A: R.32, K.33, G.35, C.36, W.37, K.38, Q.45, M.46, K.47 Ligands: 1HF.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.32, A:W.37, A:W.37, A:Q.45, A:K.47, A:K.47 Hydrogen bonds: A:G.35, A:W.37, A:Q.45, A:M.46, A:K.47 pi-Stacking: A:W.37, A:W.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goudreau, N. et al., Discovery and Structural Characterization of a New Inhibitor Series of HIV-1 Nucleocapsid Function: NMR Solution Structure Determination of a Ternary Complex Involving a 2:1 Inhibitor/NC Stoichiometry. J.Mol.Biol. (2013)

Release Date

2013-02-27

Peptides

NUCLEOCAPSID PROTEIN P7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NUCLEOCAPSID PROTEIN P7