SMTL ID : 2m9q.1

NMR structure of an inhibitor bound dengue NS3 protease

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x BEZ- NLE- LYS- ARG- M9P: Serine protease inhibitor(Non-covalent)

BEZ-NLE-LYS-ARG-M9P.1: 37 residues within 4Å: Chain A: L.6, E.7, L.8, E.45, E.46, E.47, Q.48, T.49, L.50, I.86, K.87, Q.88, G.90, I.91, L.92, G.93, Y.94, S.95, Q.96, I.97, G.98, F.107, T.109, H.112, V.113, T.114, A.117, L.119, M.120, I.138, P.163, P.193, G.194, T.195, S.196, Y.211, Y.222 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.6, A:L.6, A:L.8, A:Q.48, A:L.50, A:I.86, A:I.91, A:I.97, A:T.109, A:V.113, A:T.114, A:L.119, A:L.119 Hydrogen bonds: A:E.45, A:E.45, A:Q.88, A:L.92, A:S.95, A:H.112 Salt bridges: A:E.45, A:E.46, A:E.47, A:E.47 Halogen bonds: A:Y.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibbs, A. et al., NMR structure of an inhibitor bound dengue NS3 protease provides new insights into the NS2B NS3 ligand interactions. To be Published

Release Date

2014-07-09

Peptides

Serine protease subunit NS2B, Serine protease NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine protease subunit NS2B, Serine protease NS3

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