SMTL ID : 2mh5.1

Structure and NMR assignments of lantibiotic NAI-107 in DPC micelles

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

65 x DPV: dodecyl 2-(trimethylammonio)ethyl phosphate(Non-functional Binders)(Non-covalent)

DPV.1: 8 residues within 4Å: Ligands: DPV.2, DPV.3, DPV.15, DPV.27, DPV.29, DPV.31, DPV.50, DPV.51 No protein-ligand interaction detected (PLIP) DPV.2: 7 residues within 4Å: Ligands: DPV.1, DPV.4, DPV.28, DPV.29, DPV.31, DPV.50, DPV.51 No protein-ligand interaction detected (PLIP) DPV.3: 6 residues within 4Å: Ligands: DPV.1, DPV.15, DPV.16, DPV.18, DPV.30, DPV.31 No protein-ligand interaction detected (PLIP) DPV.4: 5 residues within 4Å: Ligands: DPV.2, DPV.19, DPV.31, DPV.32, DPV.63 No protein-ligand interaction detected (PLIP) DPV.5: 4 residues within 4Å: Ligands: DPV.6, DPV.20, DPV.21, DPV.34 No protein-ligand interaction detected (PLIP) DPV.6: 5 residues within 4Å: Chain A: W.4 Ligands: DPV.5, DPV.21, DPV.53, DPV.54 No protein-ligand interaction detected (PLIP) DPV.7: 6 residues within 4Å: Ligands: DPV.8, DPV.9, DPV.34, DPV.35, DPV.44, DPV.45 No protein-ligand interaction detected (PLIP) DPV.8: 9 residues within 4Å: Ligands: DPV.7, DPV.10, DPV.22, DPV.23, DPV.35, DPV.36, DPV.44, DPV.45, DPV.46 No protein-ligand interaction detected (PLIP) DPV.9: 7 residues within 4Å: Ligands: DPV.7, DPV.35, DPV.36, DPV.45, DPV.55, DPV.56, DPV.64 No protein-ligand interaction detected (PLIP) DPV.10: 8 residues within 4Å: Ligands: DPV.8, DPV.22, DPV.23, DPV.24, DPV.36, DPV.45, DPV.55, DPV.64 No protein-ligand interaction detected (PLIP) DPV.11: 12 residues within 4Å: Chain A: L.6, C.7, T.8, P.9, C.11 Ligands: DPV.24, DPV.25, DPV.26, DPV.37, DPV.55, DPV.56, DPV.64 No protein-ligand interaction detected (PLIP) DPV.12: 7 residues within 4Å: Ligands: DPV.13, DPV.14, DPV.26, DPV.28, DPV.48, DPV.49, DPV.58 No protein-ligand interaction detected (PLIP) DPV.13: 8 residues within 4Å: Ligands: DPV.12, DPV.14, DPV.23, DPV.26, DPV.27, DPV.28, DPV.29, DPV.48 No protein-ligand interaction detected (PLIP) DPV.14: 8 residues within 4Å: Ligands: DPV.12, DPV.13, DPV.27, DPV.28, DPV.29, DPV.41, DPV.47, DPV.48 No protein-ligand interaction detected (PLIP) DPV.15: 10 residues within 4Å: Ligands: DPV.1, DPV.3, DPV.16, DPV.17, DPV.18, DPV.19, DPV.30, DPV.33, DPV.42, DPV.61 No protein-ligand interaction detected (PLIP) DPV.16: 7 residues within 4Å: Ligands: DPV.3, DPV.15, DPV.17, DPV.18, DPV.30, DPV.59, DPV.61 No protein-ligand interaction detected (PLIP) DPV.17: 8 residues within 4Å: Ligands: DPV.15, DPV.16, DPV.30, DPV.41, DPV.47, DPV.49, DPV.59, DPV.61 No protein-ligand interaction detected (PLIP) DPV.18: 7 residues within 4Å: Ligands: DPV.3, DPV.15, DPV.16, DPV.30, DPV.31, DPV.32, DPV.63 No protein-ligand interaction detected (PLIP) DPV.19: 6 residues within 4Å: Ligands: DPV.4, DPV.15, DPV.32, DPV.33, DPV.43, DPV.63 No protein-ligand interaction detected (PLIP) DPV.20: 9 residues within 4Å: Ligands: DPV.5, DPV.21, DPV.30, DPV.33, DPV.43, DPV.44, DPV.51, DPV.53, DPV.60 No protein-ligand interaction detected (PLIP) DPV.21: 9 residues within 4Å: Ligands: DPV.5, DPV.6, DPV.20, DPV.33, DPV.34, DPV.44, DPV.51, DPV.53, DPV.57 No protein-ligand interaction detected (PLIP) DPV.22: 7 residues within 4Å: Ligands: DPV.8, DPV.10, DPV.23, DPV.43, DPV.44, DPV.45, DPV.46 No protein-ligand interaction detected (PLIP) DPV.23: 9 residues within 4Å: Ligands: DPV.8, DPV.10, DPV.13, DPV.22, DPV.24, DPV.26, DPV.46, DPV.48, DPV.64 No protein-ligand interaction detected (PLIP) DPV.24: 7 residues within 4Å: Ligands: DPV.10, DPV.11, DPV.23, DPV.26, DPV.55, DPV.58, DPV.64 No protein-ligand interaction detected (PLIP) DPV.25: 11 residues within 4Å: Chain A: G.10, C.11, T.12 Ligands: DPV.11, DPV.36, DPV.37, DPV.38, DPV.41, DPV.44, DPV.57, DPV.64 No protein-ligand interaction detected (PLIP) DPV.26: 9 residues within 4Å: Ligands: DPV.11, DPV.12, DPV.13, DPV.23, DPV.24, DPV.37, DPV.48, DPV.49, DPV.58 No protein-ligand interaction detected (PLIP) DPV.27: 7 residues within 4Å: Ligands: DPV.1, DPV.13, DPV.14, DPV.29, DPV.41, DPV.42, DPV.51 No protein-ligand interaction detected (PLIP) DPV.28: 7 residues within 4Å: Ligands: DPV.2, DPV.12, DPV.13, DPV.14, DPV.29, DPV.39, DPV.50 No protein-ligand interaction detected (PLIP) DPV.29: 9 residues within 4Å: Ligands: DPV.1, DPV.2, DPV.13, DPV.14, DPV.27, DPV.28, DPV.37, DPV.50, DPV.51 No protein-ligand interaction detected (PLIP) DPV.30: 10 residues within 4Å: Ligands: DPV.3, DPV.15, DPV.16, DPV.17, DPV.18, DPV.20, DPV.31, DPV.42, DPV.51, DPV.60 No protein-ligand interaction detected (PLIP) DPV.31: 7 residues within 4Å: Ligands: DPV.1, DPV.2, DPV.3, DPV.4, DPV.18, DPV.30, DPV.51 No protein-ligand interaction detected (PLIP) DPV.32: 5 residues within 4Å: Ligands: DPV.4, DPV.18, DPV.19, DPV.33, DPV.63 No protein-ligand interaction detected (PLIP) DPV.33: 8 residues within 4Å: Ligands: DPV.15, DPV.19, DPV.20, DPV.21, DPV.32, DPV.43, DPV.44, DPV.59 No protein-ligand interaction detected (PLIP) DPV.34: 5 residues within 4Å: Ligands: DPV.5, DPV.7, DPV.21, DPV.35, DPV.54 No protein-ligand interaction detected (PLIP) DPV.35: 9 residues within 4Å: Ligands: DPV.7, DPV.8, DPV.9, DPV.34, DPV.36, DPV.45, DPV.54, DPV.55, DPV.56 No protein-ligand interaction detected (PLIP) DPV.36: 8 residues within 4Å: Ligands: DPV.8, DPV.9, DPV.10, DPV.25, DPV.35, DPV.45, DPV.55, DPV.64 No protein-ligand interaction detected (PLIP) DPV.37: 9 residues within 4Å: Ligands: DPV.11, DPV.25, DPV.26, DPV.29, DPV.38, DPV.41, DPV.51, DPV.57, DPV.58 No protein-ligand interaction detected (PLIP) DPV.38: 7 residues within 4Å: Chain A: P.9, G.10 Ligands: DPV.25, DPV.37, DPV.57, DPV.58, DPV.62 No protein-ligand interaction detected (PLIP) DPV.39: 6 residues within 4Å: Ligands: DPV.28, DPV.40, DPV.50, DPV.57, DPV.58, DPV.62 No protein-ligand interaction detected (PLIP) DPV.40: 6 residues within 4Å: Chain A: W.4, S.5 Ligands: DPV.39, DPV.52, DPV.53, DPV.62 No protein-ligand interaction detected (PLIP) DPV.41: 9 residues within 4Å: Ligands: DPV.14, DPV.17, DPV.25, DPV.27, DPV.37, DPV.42, DPV.49, DPV.60, DPV.61 No protein-ligand interaction detected (PLIP) DPV.42: 8 residues within 4Å: Ligands: DPV.15, DPV.27, DPV.30, DPV.41, DPV.51, DPV.59, DPV.60, DPV.61 No protein-ligand interaction detected (PLIP) DPV.43: 6 residues within 4Å: Ligands: DPV.19, DPV.20, DPV.22, DPV.33, DPV.44, DPV.59 No protein-ligand interaction detected (PLIP) DPV.44: 9 residues within 4Å: Ligands: DPV.7, DPV.8, DPV.20, DPV.21, DPV.22, DPV.25, DPV.33, DPV.43, DPV.60 No protein-ligand interaction detected (PLIP) DPV.45: 7 residues within 4Å: Ligands: DPV.7, DPV.8, DPV.9, DPV.10, DPV.22, DPV.35, DPV.36 No protein-ligand interaction detected (PLIP) DPV.46: 6 residues within 4Å: Ligands: DPV.8, DPV.22, DPV.23, DPV.47, DPV.60, DPV.65 No protein-ligand interaction detected (PLIP) DPV.47: 8 residues within 4Å: Ligands: DPV.14, DPV.17, DPV.46, DPV.48, DPV.49, DPV.60, DPV.61, DPV.65 No protein-ligand interaction detected (PLIP) DPV.48: 8 residues within 4Å: Ligands: DPV.12, DPV.13, DPV.14, DPV.23, DPV.26, DPV.47, DPV.49, DPV.65 No protein-ligand interaction detected (PLIP) DPV.49: 8 residues within 4Å: Ligands: DPV.12, DPV.17, DPV.26, DPV.41, DPV.47, DPV.48, DPV.58, DPV.61 No protein-ligand interaction detected (PLIP) DPV.50: 8 residues within 4Å: Ligands: DPV.1, DPV.2, DPV.28, DPV.29, DPV.39, DPV.51, DPV.52, DPV.62 No protein-ligand interaction detected (PLIP) DPV.51: 13 residues within 4Å: Ligands: DPV.1, DPV.2, DPV.20, DPV.21, DPV.27, DPV.29, DPV.30, DPV.31, DPV.37, DPV.42, DPV.50, DPV.52, DPV.57 No protein-ligand interaction detected (PLIP) DPV.52: 7 residues within 4Å: Ligands: DPV.40, DPV.50, DPV.51, DPV.53, DPV.54, DPV.57, DPV.62 No protein-ligand interaction detected (PLIP) DPV.53: 7 residues within 4Å: Chain A: W.4 Ligands: DPV.6, DPV.20, DPV.21, DPV.40, DPV.52, DPV.62 No protein-ligand interaction detected (PLIP) DPV.54: 8 residues within 4Å: Chain A: V.1, T.2, W.4 Ligands: DPV.6, DPV.34, DPV.35, DPV.52, DPV.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.1 DPV.55: 8 residues within 4Å: Ligands: DPV.9, DPV.10, DPV.11, DPV.24, DPV.35, DPV.36, DPV.56, DPV.64 No protein-ligand interaction detected (PLIP) DPV.56: 8 residues within 4Å: Chain A: V.1, L.6 Ligands: DPV.9, DPV.11, DPV.35, DPV.54, DPV.55, DPV.64 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.6 DPV.57: 12 residues within 4Å: Chain A: S.5, P.9, G.10 Ligands: DPV.21, DPV.25, DPV.37, DPV.38, DPV.39, DPV.51, DPV.52, DPV.58, DPV.62 No protein-ligand interaction detected (PLIP) DPV.58: 9 residues within 4Å: Ligands: DPV.12, DPV.24, DPV.26, DPV.37, DPV.38, DPV.39, DPV.49, DPV.57, DPV.62 No protein-ligand interaction detected (PLIP) DPV.59: 6 residues within 4Å: Ligands: DPV.16, DPV.17, DPV.33, DPV.42, DPV.43, DPV.61 No protein-ligand interaction detected (PLIP) DPV.60: 9 residues within 4Å: Ligands: DPV.20, DPV.30, DPV.41, DPV.42, DPV.44, DPV.46, DPV.47, DPV.61, DPV.65 No protein-ligand interaction detected (PLIP) DPV.61: 10 residues within 4Å: Ligands: DPV.15, DPV.16, DPV.17, DPV.41, DPV.42, DPV.47, DPV.49, DPV.59, DPV.60, DPV.65 No protein-ligand interaction detected (PLIP) DPV.62: 8 residues within 4Å: Ligands: DPV.38, DPV.39, DPV.40, DPV.50, DPV.52, DPV.53, DPV.57, DPV.58 No protein-ligand interaction detected (PLIP) DPV.63: 4 residues within 4Å: Ligands: DPV.4, DPV.18, DPV.19, DPV.32 No protein-ligand interaction detected (PLIP) DPV.64: 9 residues within 4Å: Ligands: DPV.9, DPV.10, DPV.11, DPV.23, DPV.24, DPV.25, DPV.36, DPV.55, DPV.56 No protein-ligand interaction detected (PLIP) DPV.65: 5 residues within 4Å: Ligands: DPV.46, DPV.47, DPV.48, DPV.60, DPV.61 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munch, D. et al., The Lantibiotic NAI-107 Binds to Bactoprenol-bound Cell Wall Precursors and Impairs Membrane Functions. J.Biol.Chem. (2014)

Release Date

2014-03-05

Peptides

Lantibiotic 107891: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lantibiotic 107891