SMTL ID : 2msb.1

STRUCTURE OF A C-TYPE MANNOSE-BINDING PROTEIN COMPLEXED WITH AN OLIGOSACCHARIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 9 residues within 4Å: Chain B: K.76, E.79, N.81, H.83, E.87, N.99, D.100, I.101 Ligands: CA.6 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.55, E.59, D.82, E.87, D.88 Ligands: CA.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.55, A:E.59, A:D.82, A:D.88, H2O.1 CA.3: 5 residues within 4Å: Chain A: E.79, N.81, E.87, N.99, D.100 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.79, A:E.87, A:D.100, A:D.100 CA.4: 3 residues within 4Å: Chain A: E.59, D.88 Ligands: CA.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.59, H2O.1, H2O.1, H2O.1, H2O.1 CA.5: 6 residues within 4Å: Chain B: D.55, E.59, D.82, E.87, D.88 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.55, B:D.55, B:E.59, B:D.82, B:D.88 CA.6: 6 residues within 4Å: Chain B: E.79, N.81, E.87, N.99, D.100 Ligands: NAG-BMA-MAN-MAN-MAN-MAN-MAN.1 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.79, B:E.87, B:D.100, B:D.100 CA.7: 3 residues within 4Å: Chain B: E.59, D.88 Ligands: CA.5 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.59, H2O.4, H2O.5, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weis, W.I. et al., Structure of a C-type mannose-binding protein complexed with an oligosaccharide. Nature (1992)

Release Date

1993-10-31

Peptides

MANNOSE-BINDING PROTEIN-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MANNOSE-BINDING PROTEIN-A

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