SMTL ID : 2mtv.1

Solution Structure of the YTH Domain of YT521-B in complex with N6-Methyladenosine containing RNA

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x U- G- 6MZ- C- A- C: RNA_(5'-R(*UP*GP*(6MZ)P*CP*AP*C)-3')(Non-covalent)

U-G-6MZ-C-A-C.1: 27 residues within 4Å: Chain A: K.18, S.19, N.20, N.21, N.24, W.34, S.35, T.36, L.37, P.38, V.39, V.60, R.61, G.64, W.85, V.86, L.87, P.88, M.91, M.95, L.96, K.126, K.129, I.130, G.131, R.132, D.133 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.20, A:N.20, A:S.35, A:R.61, A:R.132 Salt bridges: A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Theler, D. et al., Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA. Nucleic Acids Res. (2014)

Release Date

2014-11-26

Peptides

YTH domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTH domain-containing protein 1