SMTL ID : 2mus.1

HADDOCK calculated model of LIN5001 bound to the HET-s amyloid

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

homo-pentamer

Ligands

1 x 3LS: 3''',4'-bis(carboxymethyl)-2,2':5',2'':5'',2''':5''',2''''-quinquethiophene-5,5''''-dicarboxylic acid(Non-covalent)

3LS.1: 18 residues within 4Å: Chain A: K.49 Chain B: S.11, K.13, S.47, V.48, K.49 Chain C: R.9, S.11, A.12, K.13, S.47, V.48, K.49 Chain D: S.11, A.12, K.13, V.48, K.49 11 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C, 1 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: D:K.13, B:K.49 Salt bridges: D:K.49, C:K.13, C:K.49, A:K.49, B:K.13, B:K.49 Hydrogen bonds: C:V.48, B:S.11 pi-Cation interactions: B:K.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herrmann, U.S. et al., Structure-based drug design identifies polythiophenes as antiprion compounds. Sci Transl Med (2015)

Release Date

2017-02-01

Peptides

Heterokaryon incompatibility protein s: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Heterokaryon incompatibility protein s