SMTL ID : 2nad.1

HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x AZI: AZIDE ION(Non-covalent)

AZI.1: 8 residues within 4Å: Chain A: P.97, F.98, G.121, I.122, N.146, R.284, H.332 Ligands: NAD.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.122, A:I.122, A:N.146, A:N.146, A:R.284, A:R.284 AZI.4: 8 residues within 4Å: Chain B: P.97, F.98, G.121, I.122, N.146, R.284, H.332 Ligands: NAD.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.122, B:N.146, B:N.146, B:R.284, B:R.284

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain B: H.263, K.286, C.288, D.289, R.290 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.290 Water bridges: B:R.290, B:R.290, B:D.291 Salt bridges: B:H.263

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 31 residues within 4Å: Chain A: F.98, I.122, G.123, N.146, S.147, V.150, A.198, A.199, G.200, R.201, I.202, D.221, R.222, H.223, N.254, C.255, P.256, H.258, E.260, T.261, T.282, A.283, R.284, D.308, V.309, H.332, S.334, G.335, S.380, Y.381 Ligands: AZI.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.122, A:V.150, A:I.202 Hydrogen bonds: A:R.201, A:I.202, A:R.222, A:E.260, A:E.260, A:D.308, A:G.335, A:S.380 Water bridges: A:G.123, A:S.147, A:S.147, A:G.200, A:G.203, A:R.241, A:H.379, A:H.379, A:Y.381, A:Y.381, A:Y.381 Salt bridges: A:R.201 NAD.5: 31 residues within 4Å: Chain B: F.98, I.122, G.123, N.146, S.147, V.150, A.198, A.199, G.200, R.201, I.202, D.221, R.222, H.223, N.254, C.255, P.256, H.258, E.260, T.261, T.282, A.283, R.284, D.308, V.309, H.332, S.334, G.335, S.380, Y.381 Ligands: AZI.4 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:I.122, B:V.150, B:I.202 Hydrogen bonds: B:R.201, B:I.202, B:R.222, B:H.223, B:E.260, B:D.308, B:G.335, B:S.380, B:Y.381 Water bridges: B:G.123, B:D.125, B:S.147, B:S.147, B:G.200, B:G.203, B:R.222, B:R.241, B:R.241, B:R.241, B:R.241, B:H.379, B:Y.381 Salt bridges: B:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamzin, V.S. et al., High resolution structures of holo and apo formate dehydrogenase. J.Mol.Biol. (1994)

Release Date

1995-01-26

Peptides

NAD-DEPENDENT FORMATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-DEPENDENT FORMATE DEHYDROGENASE

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