SMTL ID : 2ng1.1

N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: Q.106, G.107, S.108, G.109, K.110, T.111, T.112, Q.143, T.244, K.245, D.247, G.270, V.271, S.272, E.273 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.107, A:G.109, A:K.110, A:T.111, A:T.112, A:T.112, A:T.112, A:Q.143, A:K.245, A:K.245, A:S.272 Water bridges: A:S.108, A:S.108 Salt bridges: A:D.247

1 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 7 residues within 4Å: Chain A: V.271, E.279, P.280, F.281, Y.282, L.286, R.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.279, A:Y.282, A:L.286, A:R.289

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: G.104, L.105, A.188, G.189, R.190, Q.192, I.193, D.194, L.197, F.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.104, A:R.190, A:Q.192, A:D.194 EDO.4: 4 residues within 4Å: Chain A: K.116, L.147, V.151, P.275 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freymann, D.M. et al., Functional changes in the structure of the SRP GTPase on binding GDP and Mg2+GDP. Nat.Struct.Biol. (1999)

Release Date

1999-07-30

Peptides

SIGNAL SEQUENCE RECOGNITION PROTEIN FFH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIGNAL SEQUENCE RECOGNITION PROTEIN FFH