SMTL ID : 2nlh.5 (8 other biounits)

Human beta-defensin-1 (Mutant GLN24ALA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.3 Chain B: D.1, H.2, C.27, Y.28, R.29 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.2, B:Y.28, B:R.29 Water bridges: B:D.1, B:H.2, B:C.27, B:R.29, B:G.30, A:Y.3 Salt bridges: B:R.29 SO4.2: 6 residues within 4Å: Chain A: D.1, H.2, C.27, Y.28, R.29 Chain B: Y.3 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.2, A:Y.28, A:R.29 Water bridges: A:D.1, A:D.1, A:R.29, A:R.29, A:G.30, B:Y.3 Salt bridges: A:R.29 SO4.3: 6 residues within 4Å: Chain C: D.1, H.2, C.27, Y.28, R.29 Chain D: Y.3 14 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 11 interactions with chain C, 1 interactions with chain B Water bridges: D:Y.3, A:R.29, C:D.1, C:H.2, C:Y.3, C:R.29, C:R.29, C:R.29, C:G.30, B:N.4 Hydrogen bonds: C:H.2, C:Y.28, C:R.29 Salt bridges: C:R.29 SO4.4: 5 residues within 4Å: Chain A: R.29, K.31 Chain C: D.1, G.25, T.26 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:D.1, C:T.26, C:T.26 Water bridges: C:D.1, C:D.1, C:N.4, C:N.4, C:T.26 Salt bridges: A:K.31 SO4.5: 7 residues within 4Å: Chain B: D.1, N.4, A.24 Chain C: R.29 Chain D: D.1, N.4 Ligands: ACT.7 10 PLIP interactions: 3 interactions with chain D, 5 interactions with chain B, 2 interactions with chain C Hydrogen bonds: D:D.1, B:D.1, B:D.1, B:D.1, B:N.4 Water bridges: D:D.1, D:D.1, B:T.26, C:R.29 Salt bridges: C:R.29 SO4.6: 6 residues within 4Å: Chain C: Y.3 Chain D: D.1, H.2, C.27, Y.28, R.29 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:D.1, D:H.2, D:Y.28, D:R.29 Water bridges: D:D.1, D:H.2, D:C.27, D:R.29, D:G.30 Salt bridges: D:R.29

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 6 residues within 4Å: Chain B: D.1, G.25, T.26 Chain C: R.29 Chain D: N.4 Ligands: SO4.5 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: B:D.1, B:T.26, B:T.26, D:N.4 Salt bridges: C:R.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pazgier, M. et al., Studies of the Biological Properties of Human beta-Defensin 1. J.Biol.Chem. (2007)

Release Date

2006-10-31

Peptides

Beta-defensin 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

C
A

D
C

Beta-defensin 1

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