SMTL ID : 2nlq.10 (10 other biounits)

Human beta-defensin-1 (Mutant Lys31Ala)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: D.1, G.25, T.26 Ligands: GLY.2 7 PLIP interactions: 5 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:D.1, A:T.26, A:T.26, A:T.26, G.2, G.2 Water bridges: A:D.1 SO4.4: 6 residues within 4Å: Chain B: D.1, H.2, C.27, Y.28, R.29 Ligands: SO4.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.2, B:Y.28, B:R.29 Water bridges: B:D.1, B:R.29, B:R.29, B:R.29, B:G.30, B:G.30 Salt bridges: B:R.29 SO4.5: 2 residues within 4Å: Chain B: Y.3 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.3, B:Y.3, B:Y.3 SO4.6: 6 residues within 4Å: Chain A: D.1, H.2, C.27, Y.28, R.29 Chain C: Y.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.2, A:Y.28, A:R.29 Water bridges: A:D.1, A:H.2, A:C.27, A:R.29, A:G.30 Salt bridges: A:R.29

1 x GLY: GLYCINE(Non-covalent)

GLY.2: 5 residues within 4Å: Chain A: D.1, T.26, R.29, G.30 Ligands: SO4.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.1, A:D.1, A:T.26, A:G.30

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.23, T.26, G.30, A.31, A.32, K.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.32 Water bridges: A:A.31, A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pazgier, M. et al., Studies of the Biological Properties of Human beta-Defensin 1. J.Biol.Chem. (2007)

Release Date

2006-10-31

Peptides

Beta-defensin 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
A

Beta-defensin 1

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