Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 2nmp.1
Crystal structure of human Cystathionine gamma lyase
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.60 Å
Oligo State
homo-tetramer
Ligands
3 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PLP.1:
14 residues within 4Å:
Chain A:
S.90
,
G.91
,
L.92
,
Y.115
,
E.158
,
N.162
,
D.188
,
T.190
,
S.210
,
T.212
,
K.213
,
M.223
Chain B:
Y.61
,
R.63
12
PLIP interactions
:
10 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:Y.115
,
A:K.213
Hydrogen bonds:
A:S.90
,
A:G.91
,
A:L.92
,
A:N.162
,
A:T.190
,
A:K.213
,
B:Y.61
Salt bridges:
A:K.213
,
B:R.63
pi-Stacking:
A:Y.115
PLP.2:
15 residues within 4Å:
Chain C:
S.90
,
G.91
,
L.92
,
Y.115
,
E.158
,
N.162
,
D.188
,
T.190
,
S.210
,
T.212
,
K.213
,
V.222
,
M.223
Chain D:
Y.61
,
R.63
15
PLIP interactions
:
13 interactions with chain C
,
2 interactions with chain D
Hydrophobic interactions:
C:Y.115
,
C:Y.115
,
C:Y.115
,
C:T.190
Hydrogen bonds:
C:S.90
,
C:G.91
,
C:L.92
,
C:N.162
,
C:S.210
,
C:S.210
,
C:T.212
,
C:K.213
,
D:Y.61
Salt bridges:
C:K.213
,
D:R.63
PLP.3:
14 residues within 4Å:
Chain C:
Y.61
,
R.63
Chain D:
S.90
,
G.91
,
L.92
,
Y.115
,
E.158
,
N.162
,
D.188
,
T.190
,
S.210
,
T.212
,
K.213
,
M.223
15
PLIP interactions
:
12 interactions with chain D
,
3 interactions with chain C
Hydrophobic interactions:
D:Y.115
,
D:Y.115
,
D:T.190
Hydrogen bonds:
D:S.90
,
D:G.91
,
D:L.92
,
D:N.162
,
D:S.210
,
D:T.212
,
D:K.213
,
C:Y.61
,
C:Y.61
Salt bridges:
D:K.213
,
C:R.63
pi-Stacking:
D:Y.115
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Sun, Q. et al., Structural basis for the inhibition mechanism of human cystathionine gamma-lyase, an enzyme responsible for the production of H(2)S. J.Biol.Chem. (2009)
Release Date
2006-11-07
Peptides
Cystathionine gamma-lyase:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Cystathionine gamma-lyase
Related Entries With Identical Sequence
3cog.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme