SMTL ID : 2no4.2 (1 other biounit)

Crystal Structure analysis of a Dehalogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-tetramer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: D.20, A.21, Y.22, F.70, S.128, N.129, K.161, N.187 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: R.61, Q.66, Q.72, E.76 Chain B: F.215 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: Y.107, P.108, D.109, R.206, S.224, L.225 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: R.83, R.90 Ligand excluded by PLIP SO4.6: 8 residues within 4Å: Chain B: D.20, A.21, Y.22, F.70, S.128, N.129, K.161, N.187 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: N.131, D.132, E.133, D.155 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: R.83, R.90 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain A: F.215 Chain B: R.61, Q.66, Q.72, E.76 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain B: Y.107, P.108, D.109, R.206, S.224, L.225 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain B: E.112, K.116 Ligand excluded by PLIP SO4.13: 8 residues within 4Å: Chain C: D.20, A.21, Y.22, F.70, S.128, N.129, K.161, N.187 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain C: R.61, Q.66, Q.72, E.76 Chain D: F.215 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain C: Y.107, P.108, D.109, R.206, S.224, L.225 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain C: R.83, R.90 Ligand excluded by PLIP SO4.18: 8 residues within 4Å: Chain D: D.20, A.21, Y.22, F.70, S.128, N.129, K.161, N.187 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain D: N.131, D.132, E.133, D.155 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain D: R.83, R.90 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain C: F.215 Chain D: R.61, Q.66, Q.72, E.76 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain D: Y.107, P.108, D.109, R.206, S.224, L.225 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain D: E.112, K.116 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: H.29, Y.107, R.206, Q.207 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: H.29, Y.107, Q.207 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain C: H.29, Y.107, R.206, Q.207 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain D: H.29, Y.107, Q.207 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidberger, J.W. et al., Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4. J.Mol.Biol. (2007)

Release Date

2007-09-25

Peptides

(S)-2-haloacid dehalogenase IVA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

(S)-2-haloacid dehalogenase IVA

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