- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x LTT: 4-AMINO-1-[(2S,4S)-2-(HYDROXYMETHYL)-1,3-DIOXOLAN-4-YL]PYRIMIDIN-2(1H)-ONE(Non-covalent)
LTT.2: 14 residues within 4Å:- Chain A: I.50, E.73, W.78, L.102, M.105, Y.106, F.116, Q.117, A.120, R.124, R.148, D.153, F.157, Y.224
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:W.78
- Hydrogen bonds: A:E.73, A:Y.106, A:Q.117, A:Q.117, A:R.148, A:R.148, A:D.153, A:Y.224
- Water bridges: A:K.54, A:R.214
- Salt bridges: A:R.148
- pi-Stacking: A:F.157
LTT.4: 12 residues within 4Å:- Chain B: I.50, E.73, W.78, L.102, Y.106, F.116, Q.117, A.120, R.124, R.148, D.153, F.157
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.78
- Hydrogen bonds: B:E.73, B:Q.117, B:Q.117, B:R.148, B:R.148
- Water bridges: B:C.121
- Salt bridges: B:R.148
- pi-Stacking: B:F.157
LTT.6: 14 residues within 4Å:- Chain C: I.50, E.73, W.78, L.102, M.105, Y.106, F.116, Q.117, A.120, R.124, R.148, D.153, F.157, Y.224
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:W.78
- Hydrogen bonds: C:E.73, C:Q.117, C:Q.117, C:R.148, C:R.148
- Water bridges: C:K.54, C:R.214
- Salt bridges: C:R.148
- pi-Stacking: C:F.157
LTT.8: 12 residues within 4Å:- Chain D: I.50, E.73, W.78, L.102, Y.106, F.116, Q.117, A.120, R.124, R.148, D.153, F.157
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.78
- Hydrogen bonds: D:E.73, D:Y.106, D:Q.117, D:Q.117, D:R.148, D:R.148, D:D.153
- Water bridges: D:C.121
- Salt bridges: D:R.148
- pi-Stacking: D:F.157
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sabini, E. et al., Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Res. (2007)
- Release Date
- 2007-02-13
- Peptides
- deoxycytidine kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x LTT: 4-AMINO-1-[(2S,4S)-2-(HYDROXYMETHYL)-1,3-DIOXOLAN-4-YL]PYRIMIDIN-2(1H)-ONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sabini, E. et al., Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Res. (2007)
- Release Date
- 2007-02-13
- Peptides
- deoxycytidine kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B