SMTL ID : 2nq6.1

Crystal structure of human methionine aminopeptidase type 1 in complex with 3-tert-Butoxycarbonylaminopyridine-2-carboxylic acid thiazole-2-ylamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: D.165, T.167, D.176, E.303 Ligands: CO.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.165, A:D.176, A:E.303, H2O.1, H2O.2 CO.2: 6 residues within 4Å: Chain A: D.176, H.239, T.270, E.272, E.303 Ligands: CO.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.176, A:H.239, A:E.272, A:E.303, H2O.1 CO.3: 2 residues within 4Å: Chain A: H.148 Ligands: HM4.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.148, H2O.1, H2O.1, H2O.3

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: S.141, V.142, N.143, V.145, S.299 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.143, A:V.145, A:S.299, H2O.3, H2O.13

1 x HM4: TERT-BUTYL {2-[(1,3-THIAZOL-2-YLAMINO)CARBONYL]PYRIDIN-3-YL}CARBAMATE(Non-covalent)

HM4.5: 11 residues within 4Å: Chain A: E.64, P.128, Y.131, Y.132, F.134, C.139, H.148, C.237, H.246, W.289 Ligands: CO.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.132 pi-Cation interactions: A:H.239

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: T.108, T.140, S.141, V.142, V.145, I.150, P.151, D.152, R.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.108, A:V.142, A:D.152, A:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X. et al., Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-11-21

Peptides

Methionine aminopeptidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1

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