SMTL ID : 2nr6.1 (1 other biounit)

Crystal structure of the complex of antibody and the allergen Bla g 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: D.264, N.275, I.276, S.277, Y.280, H.311, Y.312 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: V.153, N.317, E.319, N.320 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.153 Hydrogen bonds: A:N.317, A:E.319, A:E.319, A:N.320

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: Y.19, H.158, H.166, D.306, D.310 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.158, A:H.166, A:D.306, A:D.306, A:D.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Crystal structure of a dimerized cockroach allergen Bla g 2 complexed with a monoclonal antibody. J.Biol.Chem. (2008)

Release Date

2008-02-19

Peptides

Aspartic protease Bla g 2: A
Antibody light chain: B
Antibody heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Aspartic protease Bla g 2

Antibody light chain

Antibody heavy chain

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