SMTL ID : 2ntf.3 (2 other biounits)

Crystal Structure of a Quorum-Quenching Antibody in Complex with an N-Acyl-L-Homoserine Lactone Analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-2-2-mer

Ligands

2 x OHM: 3-OXO-N-[(3S)-2-OXOPYRROLIDIN-3-YL]DODECANAMIDE(Non-covalent)

OHM.1: 15 residues within 4Å: Chain A: Y.34, N.36, W.93, W.98 Chain B: W.33, H.35, G.99, S.100, N.104, N.105, Y.106, G.107, W.108, F.109 Chain C: H.191 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:W.93, A:W.98, B:W.33, B:F.109 Hydrogen bonds: A:N.36, A:N.36, B:S.100, B:N.105, B:G.107 OHM.2: 15 residues within 4Å: Chain C: Y.34, N.36, W.93, W.98 Chain D: W.33, H.35, Y.59, G.99, S.100, N.104, N.105, Y.106, G.107, W.108, F.109 9 PLIP interactions: 6 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:W.33, D:W.33, D:F.109, C:W.93 Hydrogen bonds: D:S.100, D:N.105, D:G.107, C:N.36, C:N.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Debler, E.W. et al., Crystal Structures of a Quorum-quenching Antibody. J.Mol.Biol. (2007)

Release Date

2007-05-08

Peptides

Murine Antibody Fab RS2-1G9 Lambda Light Chain: AC
Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
A

B
H

D
B

Murine Antibody Fab RS2-1G9 Lambda Light Chain

Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain

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