SMTL ID : 2ntr.1

Crystal structure of Human Bace-1 bound to inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x L00: (2R)-2-(5-{3-chloro-6-((2-methoxyethyl){[(1S,2S)-2-methylcyclopropyl]methyl}amino)-2-[methyl(methylsulfonyl)amino]pyrid in-4-yl}-1,3,4-oxadiazol-2-yl)-1-phenylpropan-2-amine(Non-covalent)

L00.1: 21 residues within 4Å: Chain A: S.30, G.31, Q.32, G.33, L.50, D.52, G.54, Y.91, T.92, Q.93, F.128, I.130, W.135, I.138, D.248, G.250, T.251, T.252, N.253, R.255, S.345 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:Y.91, A:Y.91, A:Q.93, A:W.135, A:I.138 Hydrogen bonds: A:T.92, A:Q.93, A:Q.93, A:D.248, A:T.252, A:N.253, A:S.345 Water bridges: A:T.92, A:T.251 pi-Stacking: A:F.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGaughey, G.B. et al., Beta-secretase (BACE-1) inhibitors: accounting for 10s loop flexibility using rigid active sites. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-11-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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