SMTL ID : 2nua.2 (1 other biounit)

C123aV Mutant of E. coli Succinyl-CoA Synthetase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: S.153, G.154, T.155, H.246 Chain B: G.265, A.266, G.267, L.268 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.266, B:G.267, B:L.268, A:G.154, A:T.155 Salt bridges: A:H.246 PO4.6: 8 residues within 4Å: Chain C: S.153, G.154, T.155, H.246 Chain D: G.265, A.266, G.267, L.268 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:A.266, D:G.267, D:L.268, C:G.154, C:T.155 Salt bridges: C:H.246

4 x COA: COENZYME A(Non-covalent)

COA.2: 23 residues within 4Å: Chain A: G.14, T.16, G.17, S.18, Q.19, V.38, T.39, P.40, K.42, Y.71, V.72, P.73, F.76, D.79, S.80, I.95, T.96, E.97, N.122, V.123, P.124, I.136 Chain D: R.161 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.19, A:E.97 Hydrogen bonds: A:G.14, A:T.16, A:S.18, A:S.18, A:Q.19, A:T.39, A:D.79, A:D.79, A:I.95, A:E.97 Salt bridges: A:K.42 COA.5: 11 residues within 4Å: Chain B: G.320, G.321, I.322, V.323, R.324, C.325, I.328, L.349, E.350, G.351, N.352 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.352 Hydrogen bonds: B:N.352 COA.7: 23 residues within 4Å: Chain B: R.161 Chain C: G.14, T.16, G.17, S.18, Q.19, V.38, T.39, P.40, K.42, Y.71, V.72, P.73, F.76, D.79, S.80, I.95, T.96, E.97, N.122, V.123, P.124, I.136 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:Q.19, C:E.97 Hydrogen bonds: C:G.14, C:T.16, C:T.16, C:S.18, C:S.18, C:Q.19, C:T.39, C:D.79, C:I.95, C:E.97 Salt bridges: C:K.42 COA.10: 11 residues within 4Å: Chain D: G.320, G.321, I.322, V.323, R.324, C.325, I.328, L.349, E.350, G.351, N.352 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:N.352 Hydrogen bonds: D:N.352

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain B: G.52, G.53, R.54, G.55, D.213 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.53, B:R.54, B:G.55 Salt bridges: B:R.54 SO4.4: 4 residues within 4Å: Chain A: R.243 Chain B: M.1, G.220, R.233 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:M.1, B:G.220 Salt bridges: B:R.233, A:R.243 SO4.8: 5 residues within 4Å: Chain D: G.52, G.53, R.54, G.55, D.213 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.53, D:R.54, D:G.55 Salt bridges: D:R.54 SO4.9: 4 residues within 4Å: Chain C: R.243 Chain D: M.1, G.220, R.233 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:M.1, D:G.220 Salt bridges: D:R.233, C:R.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hidber, E. et al., Participation of Cys 123alpha of Escherichia coli Succinyl-CoA Synthetase in Catalysis. ACTA CRYSTALLOGR.,SECT.D (2007)

Release Date

2007-07-24

Peptides

Succinyl-CoA ligase [ADP-forming] subunit alpha: AC
Succinyl-CoA synthetase beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

B
E

D
E

Succinyl-CoA ligase [ADP-forming] subunit alpha

Succinyl-CoA synthetase beta chain

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