SMTL ID : 2nuj.1

Crystal structure of thioesterase superfamily (YP_509914.1) from Jannaschia Sp. CCS1 at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

10 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: E.54, R.57, L.58, L.76, L.78 Chain B: F.35 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.58, A:L.76, A:L.78 Hydrogen bonds: A:R.57, A:R.57 MPD.2: 6 residues within 4Å: Chain A: P.10, P.12, T.26, F.27, R.64, E.156 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.10, A:F.27 Hydrogen bonds: A:R.64 Water bridges: A:A.13, A:T.26, A:R.64 MPD.3: 6 residues within 4Å: Chain A: F.35 Chain B: E.54, R.57, L.58, L.61, L.76 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.58, B:L.61, B:L.76 Hydrogen bonds: B:E.54, B:E.54, B:R.57, B:R.57 MPD.4: 6 residues within 4Å: Chain A: R.34, G.36, E.37 Chain B: R.34, G.36, R.51 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:E.37 Hydrogen bonds: A:R.34, B:R.34, B:E.37 Water bridges: A:E.37, A:W.52 MPD.5: 5 residues within 4Å: Chain A: M.91 Chain B: L.58, P.59, K.62, Y.69 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.62, B:Y.69 MPD.6: 6 residues within 4Å: Chain C: E.54, R.57, L.58, L.76, L.78 Chain D: F.35 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.58, C:L.76, C:L.78 Hydrogen bonds: C:E.54, C:R.57, C:R.57 MPD.7: 6 residues within 4Å: Chain C: P.10, P.12, T.26, F.27, R.64, E.156 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:P.10, C:F.27 Hydrogen bonds: C:R.64 Water bridges: C:A.13, C:T.26, C:R.64 MPD.8: 6 residues within 4Å: Chain C: F.35 Chain D: E.54, R.57, L.58, L.61, L.76 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.58, D:L.61, D:L.76 Hydrogen bonds: D:E.54, D:R.57, D:R.57 MPD.9: 6 residues within 4Å: Chain C: R.34, G.36, E.37 Chain D: R.34, G.36, R.51 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:E.37 Hydrogen bonds: C:R.34, D:R.34 Water bridges: C:E.37, C:E.37 MPD.10: 5 residues within 4Å: Chain C: M.91 Chain D: L.58, P.59, K.62, Y.69 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.62, D:Y.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of thioesterase superfamily (YP_509914.1) from Jannaschia Sp. CCS1 at 2.00 A resolution. To be published

Release Date

2006-12-12

Peptides

Thioesterase superfamily: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Thioesterase superfamily