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SMTL ID : 2nva.4
(3 other biounits)
The X-ray crystal structure of the Paramecium bursaria Chlorella virus arginine decarboxylase bound to agmatine
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
PL2
:
(4-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE
(Non-covalent)
PL2.1:
23 residues within 4Å:
Chain A:
A.46
,
K.48
,
D.67
,
A.90
,
L.145
,
H.176
,
S.179
,
G.180
,
G.215
,
G.216
,
E.252
,
P.253
,
G.254
,
R.255
,
N.292
,
F.295
,
E.296
,
Y.353
,
L.357
Chain B:
Y.287
,
C.324
,
D.325
,
F.361
19
PLIP interactions
:
13 interactions with chain A
,
6 interactions with chain B
Hydrogen bonds:
A:G.180
,
A:G.216
,
A:E.252
,
A:G.254
,
A:R.255
,
A:N.292
,
B:Y.287
,
B:Y.287
Water bridges:
A:R.133
,
A:L.217
,
A:L.217
,
B:C.324
Salt bridges:
A:H.176
,
A:R.255
,
A:E.296
,
B:D.325
pi-Stacking:
A:H.176
Hydrophobic interactions:
B:D.325
,
B:F.361
PL2.2:
24 residues within 4Å:
Chain A:
Y.287
,
C.324
,
D.325
Chain B:
A.46
,
K.48
,
D.67
,
A.90
,
R.133
,
V.143
,
L.145
,
H.176
,
S.179
,
G.180
,
G.215
,
G.216
,
E.252
,
P.253
,
G.254
,
R.255
,
N.292
,
F.295
,
E.296
,
Y.353
,
L.357
19
PLIP interactions
:
15 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:V.143
,
B:Y.353
Hydrogen bonds:
B:G.180
,
B:G.216
,
B:E.252
,
B:G.254
,
B:R.255
,
B:N.292
,
A:Y.287
,
A:Y.287
Water bridges:
B:R.133
,
B:L.217
,
B:L.217
,
A:C.324
Salt bridges:
B:H.176
,
B:R.255
,
B:E.296
,
A:D.325
pi-Stacking:
B:H.176
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Shah, R. et al., X-ray Structure of Paramecium bursaria Chlorella Virus Arginine Decarboxylase: Insight into the Structural Basis for Substrate Specificity. Biochemistry (2007)
Release Date
2007-03-20
Peptides
arginine decarboxylase, A207R protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
G
B
H
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arginine decarboxylase, A207R protein
Related Entries With Identical Sequence
2nva.1
|
2nva.2
|
2nva.3
Cartoon
Cartoon
Tube
Trace
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Licorice
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