SMTL ID : 2nxf.1

Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.13, Q.15, D.60, H.267 Ligands: ZN.2, PO4.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.13, A:D.60, A:H.267, H2O.14 ZN.2: 7 residues within 4Å: Chain A: D.13, D.60, N.96, H.228, H.265 Ligands: ZN.1, PO4.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.60, A:H.228, A:H.265, H2O.14 ZN.3: 1 residues within 4Å: Chain A: H.174 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.174, H2O.8 ZN.4: 2 residues within 4Å: Chain A: H.166, I.170 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.166, H2O.5, H2O.6

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 9 residues within 4Å: Chain A: Q.15, R.31, D.60, N.96, H.97, H.265, H.267 Ligands: ZN.1, ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.96 Water bridges: A:Y.100, A:H.265, A:H.265 Salt bridges: A:R.31, A:H.97, A:H.265, A:H.267

1 x EOH: ETHANOL(Non-functional Binders)

EOH.6: 5 residues within 4Å: Chain A: R.48, R.51, V.52, C.86, V.88 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.88 Hydrogen bonds: A:C.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bitto, E. et al., Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393. To be Published

Release Date

2006-12-12

Peptides

Putative dimetal phosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative dimetal phosphatase