- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.2: 13 residues within 4Å:- Chain A: N.10, K.40, S.42, K.45, D.80, Q.98, P.100, A.101, K.123, R.153, H.184, F.219, E.221
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:S.42, A:Q.98, A:A.101
- Water bridges: A:N.47, A:N.47, A:N.47, A:F.102
- Salt bridges: A:K.40, A:K.45, A:K.123, A:K.123, A:R.153, A:H.184, A:H.184
PEP.3: 14 residues within 4Å:- Chain B: N.10, K.40, S.42, K.45, D.80, Q.98, P.100, A.101, K.123, R.153, H.184, F.219, E.221
- Ligands: PEP.4
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:S.42, B:Q.98, B:A.101
- Water bridges: B:K.45, B:N.47, B:N.47, B:N.47, B:F.102
- Salt bridges: B:K.40, B:K.45, B:K.123, B:K.123, B:R.153, B:H.184, B:H.184
PEP.4: 7 residues within 4Å:- Chain A: R.105
- Chain B: N.47, R.48, S.49, Q.187, D.232
- Ligands: PEP.3
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.47, B:S.49, B:S.49
- Water bridges: B:R.48, B:S.50, B:S.53, B:Q.187, B:Q.187, B:D.232, B:D.232
- Salt bridges: B:R.48, A:R.105, A:R.105
PEP.5: 12 residues within 4Å:- Chain C: N.10, K.40, S.42, K.45, D.80, Q.98, P.100, A.101, K.123, R.153, H.184, F.219
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:S.42, C:Q.98, C:A.101
- Water bridges: C:K.45, C:N.47, C:F.102
- Salt bridges: C:K.40, C:K.45, C:K.123, C:K.123, C:R.153, C:H.184, C:H.184
PEP.6: 7 residues within 4Å:- Chain C: K.45, N.47, R.48, S.49, Q.187, D.232
- Chain D: R.105
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:S.49, C:S.49, C:D.232
- Water bridges: C:K.45, C:S.53
- Salt bridges: C:K.45, C:R.48, C:R.48, D:R.105
PEP.8: 13 residues within 4Å:- Chain D: N.10, K.40, S.42, K.45, D.80, Q.98, P.100, A.101, K.123, R.153, H.184, F.219, E.221
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:S.42, D:Q.98, D:A.101
- Water bridges: D:N.47, D:N.47, D:N.47
- Salt bridges: D:K.40, D:K.45, D:K.123, D:K.123, D:R.153, D:H.184, D:H.184
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kona, F. et al., Structural and mechanistic changes along an engineered path from metallo to nonmetallo 3-deoxy-D-manno-octulosonate 8-phosphate synthases. Biochemistry (2007)
- Release Date
- 2007-07-24
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kona, F. et al., Structural and mechanistic changes along an engineered path from metallo to nonmetallo 3-deoxy-D-manno-octulosonate 8-phosphate synthases. Biochemistry (2007)
- Release Date
- 2007-07-24
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D