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SMTL ID : 2nxw.2
(1 other biounit)
Crystal structure of phenylpyruvate decarboxylase of Azospirillum brasilense
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
homo-dimer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
4 residues within 4Å:
Chain A:
D.449
,
N.476
,
S.478
Ligands:
TPP.3
3
PLIP interactions
:
2 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:D.449
,
A:S.478
,
H
2
O.1
MG.5:
4 residues within 4Å:
Chain B:
D.449
,
N.476
,
S.478
Ligands:
TPP.7
3
PLIP interactions
:
2 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:D.449
,
B:S.478
,
H
2
O.27
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.2:
7 residues within 4Å:
Chain A:
C.230
,
V.231
,
T.256
,
M.258
,
A.298
,
I.299
,
Y.420
Ligand excluded by PLIP
CL.6:
6 residues within 4Å:
Chain B:
C.230
,
V.231
,
T.256
,
A.298
,
I.299
,
Y.420
Ligand excluded by PLIP
2 x
TPP
:
THIAMINE DIPHOSPHATE
(Non-covalent)
TPP.3:
21 residues within 4Å:
Chain A:
G.401
,
D.402
,
A.422
,
G.423
,
M.424
,
G.448
,
D.449
,
G.450
,
A.451
,
M.454
,
N.476
,
S.478
,
W.479
,
E.480
,
M.481
,
L.482
Chain B:
P.43
,
G.44
,
E.68
,
G.95
Ligands:
MG.1
16
PLIP interactions
:
15 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:W.479
,
A:L.482
Hydrogen bonds:
A:D.402
,
A:A.422
,
A:M.424
,
A:G.450
,
A:A.451
,
A:N.476
,
A:E.480
,
A:M.481
Water bridges:
A:C.403
,
A:G.448
,
A:D.449
,
A:D.449
,
A:N.476
,
B:G.95
TPP.7:
21 residues within 4Å:
Chain A:
P.43
,
G.44
,
E.68
,
G.95
Chain B:
G.401
,
D.402
,
A.422
,
G.423
,
M.424
,
G.448
,
D.449
,
G.450
,
A.451
,
M.454
,
N.476
,
S.478
,
W.479
,
E.480
,
M.481
,
L.482
Ligands:
MG.5
15
PLIP interactions
:
14 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:W.479
,
B:L.482
Hydrogen bonds:
B:D.402
,
B:A.422
,
B:M.424
,
B:G.450
,
B:A.451
,
B:N.476
,
B:E.480
,
B:M.481
Water bridges:
B:C.403
,
B:G.448
,
B:D.449
,
B:D.449
,
A:G.95
3 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.4:
7 residues within 4Å:
Chain A:
S.83
,
T.84
,
P.112
,
R.173
,
S.176
,
R.235
,
Y.236
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:S.83
,
A:R.173
,
A:S.176
Water bridges:
A:T.84
,
A:L.85
GOL.8:
7 residues within 4Å:
Chain B:
S.83
,
T.84
,
P.112
,
R.173
,
S.176
,
R.235
,
Y.236
5
PLIP interactions
:
5 interactions with chain B
Hydrogen bonds:
B:S.176
Water bridges:
B:S.83
,
B:T.84
,
B:T.84
,
B:L.85
GOL.9:
6 residues within 4Å:
Chain B:
H.63
,
Q.435
,
C.436
,
L.465
,
G.466
,
I.467
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:H.63
Water bridges:
B:Q.435
,
B:G.439
,
B:G.440
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Versees, W. et al., The crystal structure of phenylpyruvate decarboxylase from Azospirillum brasilense at 1.5 A resolution. Implications for its catalytic and regulatory mechanism. Febs J. (2007)
Release Date
2007-05-29
Peptides
PHENYL-3-PYRUVATE DECARBOXYLASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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PHENYL-3-PYRUVATE DECARBOXYLASE
Related Entries With Identical Sequence
2nxw.1
|
2q5j.1
|
2q5j.2
|
2q5l.1
|
2q5l.2
|
2q5o.1
|
2q5o.2
|
2q5q.1
|
2q5q.2
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