SMTL ID : 2nyd.1

Crystal structure of Staphylococcus aureus hypothetical protein SA1388

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.68, D.106, E.333 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.68, A:D.106, A:D.106, A:E.333, H2O.8 ZN.2: 4 residues within 4Å: Chain A: H.69, H.330, E.333 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.69, A:H.330, A:E.333, H2O.8, H2O.27 ZN.3: 4 residues within 4Å: Chain B: H.69, H.330, E.333 Ligands: ZN.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.69, B:H.330, B:E.333, H2O.7, H2O.25 ZN.4: 4 residues within 4Å: Chain B: H.68, D.106, E.333 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.68, B:D.106, B:D.106, B:E.333, H2O.25 ZN.5: 4 residues within 4Å: Chain C: H.68, D.106, E.333 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.68, C:D.106, C:D.106, C:E.333, H2O.41 ZN.6: 4 residues within 4Å: Chain C: H.69, H.330, E.333 Ligands: ZN.5 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.69, C:H.330, C:E.333, H2O.41, H2O.59 ZN.7: 4 residues within 4Å: Chain D: H.69, H.330, E.333 Ligands: ZN.8 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.69, D:H.330, D:E.333, H2O.40, H2O.57 ZN.8: 4 residues within 4Å: Chain D: H.68, D.106, E.333 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.68, D:D.106, D:D.106, D:E.333, H2O.57 ZN.9: 4 residues within 4Å: Chain E: H.68, D.106, E.333 Ligands: ZN.10 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.68, E:D.106, E:D.106, E:E.333, H2O.74 ZN.10: 4 residues within 4Å: Chain E: H.69, H.330, E.333 Ligands: ZN.9 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.69, E:H.330, E:E.333, H2O.74, H2O.92 ZN.11: 4 residues within 4Å: Chain F: H.69, H.330, E.333 Ligands: ZN.12 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.69, F:H.330, F:E.333, H2O.73, H2O.90 ZN.12: 4 residues within 4Å: Chain F: H.68, D.106, E.333 Ligands: ZN.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.68, F:D.106, F:D.106, F:E.333, H2O.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh Saikatendu, K. et al., Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center. Bmc Struct.Biol. (2006)

Release Date

2007-01-09

Peptides

UPF0135 protein SA1388: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

UPF0135 protein SA1388