SMTL ID : 2nyg.1 (2 other biounits)

Crystal structure of YokD protein from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 17 residues within 4Å: Chain A: L.2, I.5, H.36, S.37, S.38, L.39, S.40, G.43, W.44, V.45, G.48, G.111, M.112, G.113, Q.114, A.176, S.180 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.36 Hydrogen bonds: A:L.39, A:S.40, A:S.40, A:S.40, A:V.45, A:V.45, A:G.48, A:G.111, A:Q.114, A:S.180 COA.2: 15 residues within 4Å: Chain B: S.37, S.38, L.39, S.40, G.43, W.44, V.45, G.48, G.111, M.112, G.113, Q.114, G.175, A.176, S.180 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:L.39, B:S.40, B:S.40, B:S.40, B:V.45, B:V.45, B:G.48, B:G.111, B:Q.114, B:S.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madegowda, M. et al., Crystal structure of YokD protein from Bacillus subtilis. To be Published

Release Date

2006-12-12

Peptides

YokD protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

YokD protein

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