SMTL ID : 2nyq.1

Structure of Vibrio proteolyticus aminopeptidase with a bound Trp fragment of dLWCF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TRP: Tetrapeptide(Non-covalent)

TRP.1: 15 residues within 4Å: Chain A: D.117, E.151, E.152, D.179, M.180, C.223, Y.225, C.227, M.242, F.244, F.248, I.255, H.256 Ligands: ZN.2, ZN.3 Protein-ligand interaction information (PLIP) not available

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: D.117, E.152, H.256 Ligands: TRP.1, ZN.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.117, A:D.117, A:E.152, A:E.152, A:H.256 ZN.3: 7 residues within 4Å: Chain A: H.97, D.117, E.151, E.152, D.179 Ligands: TRP.1, ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.97, A:D.117, A:D.179, A:D.179, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Substrate recognition by the leucine aminopeptidase from Vibrio proteolyticus. To be Published

Release Date

2007-10-30

Peptides

Aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminopeptidase

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