SMTL ID : 2nzl.2 (1 other biounit)

Crystal structure of human hydroxyacid oxidase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: Y.48, Y.49, A.101, T.102, A.103, S.130, W.132, Q.152, Y.154, T.180, K.258, S.280, H.282, G.283, R.285, D.313, G.314, G.315, R.317, V.335, G.336, R.337 Ligands: GLV.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.48, A:Y.49, A:T.102, A:R.337 Hydrogen bonds: A:A.101, A:A.103, A:Q.152, A:K.258, A:K.258, A:S.280, A:G.314, A:G.315, A:G.336, A:R.337 Water bridges: A:G.283, A:D.313, A:D.313, A:V.316, A:V.316, A:R.317, A:R.337 Salt bridges: A:R.317, A:R.337 FMN.3: 23 residues within 4Å: Chain B: Y.48, Y.49, A.101, T.102, A.103, S.130, W.132, Q.152, Y.154, T.180, K.258, S.280, H.282, G.283, R.285, D.313, G.314, G.315, R.317, V.335, G.336, R.337 Ligands: GLV.4 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:Y.48, B:Y.49, B:T.102, B:R.337 Hydrogen bonds: B:A.101, B:A.103, B:Q.152, B:K.258, B:K.258, B:S.280, B:G.314, B:G.315, B:G.336, B:R.337 Water bridges: B:G.283, B:D.313, B:D.313, B:V.316, B:V.316, B:R.317, B:R.337 Salt bridges: B:R.317, B:R.337 FMN.5: 23 residues within 4Å: Chain C: Y.48, Y.49, A.101, T.102, A.103, S.130, W.132, Q.152, Y.154, T.180, K.258, S.280, H.282, G.283, R.285, D.313, G.314, G.315, R.317, V.335, G.336, R.337 Ligands: GLV.6 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:Y.48, C:Y.49, C:T.102, C:R.337 Hydrogen bonds: C:A.101, C:A.103, C:Q.152, C:K.258, C:K.258, C:S.280, C:G.314, C:G.315, C:G.336, C:R.337 Water bridges: C:G.283, C:D.313, C:D.313, C:V.316, C:V.316, C:R.317, C:R.337 Salt bridges: C:R.317, C:R.337 FMN.7: 23 residues within 4Å: Chain D: Y.48, Y.49, A.101, T.102, A.103, S.130, W.132, Q.152, Y.154, T.180, K.258, S.280, H.282, G.283, R.285, D.313, G.314, G.315, R.317, V.335, G.336, R.337 Ligands: GLV.8 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:Y.48, D:Y.49, D:T.102, D:R.337 Hydrogen bonds: D:A.101, D:A.103, D:Q.152, D:K.258, D:K.258, D:S.280, D:G.314, D:G.315, D:G.336, D:R.337 Water bridges: D:G.283, D:D.313, D:D.313, D:V.316, D:V.316, D:R.317, D:R.337 Salt bridges: D:R.317, D:R.337

4 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.2: 8 residues within 4Å: Chain A: Y.48, W.132, Y.154, R.189, L.227, H.282, R.285 Ligands: FMN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.48, A:Y.48 Salt bridges: A:R.189, A:H.282, A:R.285 GLV.4: 8 residues within 4Å: Chain B: Y.48, W.132, Y.154, R.189, L.227, H.282, R.285 Ligands: FMN.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.48, B:Y.48 Salt bridges: B:R.189, B:H.282, B:R.285 GLV.6: 8 residues within 4Å: Chain C: Y.48, W.132, Y.154, R.189, L.227, H.282, R.285 Ligands: FMN.5 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.48, C:Y.48 Salt bridges: C:R.189, C:H.282, C:R.285 GLV.8: 8 residues within 4Å: Chain D: Y.48, W.132, Y.154, R.189, L.227, H.282, R.285 Ligands: FMN.7 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Y.48, D:Y.48 Salt bridges: D:R.189, D:H.282, D:R.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugochukwu, E. et al., Crystal structure of human hydroxyacid oxidase 1. To be Published

Release Date

2006-12-12

Peptides

Hydroxyacid oxidase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Hydroxyacid oxidase 1

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