SMTL ID : 2o08.1

CRYSTAL STRUCTURE OF A PUTATIVE HD SUPERFAMILY HYDROLASE (BH1327) FROM BACILLUS HALODURANS AT 1.90 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: H.22, H.51, D.52, D.128, R.134 Ligands: FE.2, PO4.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:H.51, A:D.52, A:D.128, H2O.5 FE.2: 6 residues within 4Å: Chain A: D.52, H.84, H.110, T.111 Ligands: FE.1, PO4.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.52, A:H.84, A:H.110, H2O.1, H2O.5 FE.10: 6 residues within 4Å: Chain B: D.52, H.84, H.110, T.111 Ligands: FE.11, DGI.13 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.52, B:H.84, B:H.110, H2O.12 FE.11: 6 residues within 4Å: Chain B: H.22, H.51, D.52, D.128 Ligands: FE.10, DGI.13 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.22, B:H.51, B:D.52, B:D.128, H2O.12

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: R.19, H.22, D.52, K.55, H.84, D.128, R.134 Ligands: FE.1, FE.2, UNL.4 7 PLIP interactions: 7 interactions with chain A Water bridges: A:K.55, A:K.55 Salt bridges: A:R.19, A:H.22, A:K.55, A:H.84, A:R.134

1 x UNL: UNKNOWN LIGAND(Non-covalent)

UNL.4: 10 residues within 4Å: Chain A: Y.78, L.82, T.111, T.161, L.165, P.171, I.172, Y.173, T.176 Ligands: PO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.171, A:Y.173 Water bridges: A:K.55, A:K.55, A:R.134

7 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 5 residues within 4Å: Chain A: P.13, H.14, L.15, T.16 Ligands: PG4.9 No protein-ligand interaction detected (PLIP) PG4.6: 6 residues within 4Å: Chain A: D.32, L.33, L.36, I.130, R.143, K.147 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.147 Water bridges: A:D.32, A:L.36, A:K.147 PG4.7: 6 residues within 4Å: Chain A: K.167, K.168, N.169, Q.170, P.171 Ligands: PG4.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.167, A:N.169 Water bridges: A:Q.170 PG4.8: 3 residues within 4Å: Chain A: K.167, K.168 Ligands: PG4.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.168 PG4.9: 6 residues within 4Å: Chain A: K.12, P.13, L.15, E.17, Y.20 Ligands: PG4.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.12 PG4.14: 4 residues within 4Å: Chain B: H.14, Y.53, R.57, E.95 No protein-ligand interaction detected (PLIP) PG4.15: 4 residues within 4Å: Chain B: L.33, L.36, R.143, K.147 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.147

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.12: 5 residues within 4Å: Chain B: G.1, G.97, I.98, E.99, D.100 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.97, B:E.99, B:D.100 Water bridges: B:G.1

1 x DGI: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE(Non-covalent)

DGI.13: 20 residues within 4Å: Chain B: R.19, H.22, D.52, K.55, Y.78, E.81, L.82, H.84, H.110, T.111, D.128, R.134, T.161, L.165, P.171, I.172, Y.173, T.176 Ligands: FE.10, FE.11 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:P.171, B:P.171, B:Y.173 Water bridges: B:R.134 Salt bridges: B:R.19, B:H.22, B:K.55, B:K.55, B:H.84, B:H.84, B:H.110, B:R.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (NP_242193.1) from Bacillus halodurans at 1.90 A resolution. To be published

Release Date

2006-12-19

Peptides

BH1327 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BH1327 protein