SMTL ID : 2o23.1

The structure of wild-type human HADH2 (17beta-hydroxysteroid dehydrogenase type 10) bound to NAD+ at 1.2 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: G.19, S.22, G.23, L.24, D.43, L.44, A.65, D.66, V.67, C.93, A.94, G.95, V.122, T.155, A.156, S.157, Y.170, K.174, P.200, G.201, L.202, F.203, T.205, P.206 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.200 Hydrogen bonds: A:G.19, A:S.22, A:S.22, A:L.24, A:L.44, A:D.66, A:D.66, A:V.67, A:A.94, A:G.95, A:K.174, A:F.203, A:F.203 Water bridges: A:G.25, A:I.96 NAD.2: 27 residues within 4Å: Chain B: G.19, S.22, G.23, L.24, D.43, L.44, A.65, D.66, V.67, C.93, A.94, G.95, I.96, V.122, T.155, A.156, S.157, Y.170, K.174, P.200, G.201, L.202, F.203, T.205, P.206, L.207, L.208 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.200 Hydrogen bonds: B:G.19, B:S.22, B:S.22, B:L.24, B:L.44, B:D.66, B:V.67, B:A.94, B:G.95, B:Y.170, B:K.174, B:F.203, B:F.203, B:T.205 Water bridges: B:G.25 NAD.4: 24 residues within 4Å: Chain C: G.19, S.22, G.23, L.24, D.43, L.44, A.65, D.66, V.67, C.93, A.94, G.95, V.122, T.155, A.156, S.157, Y.170, K.174, P.200, G.201, L.202, F.203, T.205, P.206 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:P.200 Hydrogen bonds: C:G.19, C:S.22, C:S.22, C:L.24, C:L.44, C:D.66, C:V.67, C:A.94, C:G.95, C:Y.170, C:K.174, C:F.203, C:F.203, C:T.205 Water bridges: C:G.25, C:I.96 NAD.5: 27 residues within 4Å: Chain D: G.19, S.22, G.23, L.24, D.43, L.44, A.65, D.66, V.67, C.93, A.94, G.95, I.96, V.122, T.155, A.156, S.157, Y.170, K.174, P.200, G.201, L.202, F.203, T.205, P.206, L.207, L.208 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.200 Hydrogen bonds: D:G.19, D:S.22, D:S.22, D:L.24, D:L.44, D:D.66, D:D.66, D:V.67, D:A.94, D:G.95, D:K.174, D:F.203, D:F.203 Water bridges: D:G.25

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: E.251, V.252, R.254 Chain B: E.251, V.252, R.254 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:E.251, A:V.252 Hydrogen bonds: B:V.252 GOL.6: 6 residues within 4Å: Chain C: E.251, V.252, R.254 Chain D: E.251, V.252, R.254 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Water bridges: C:E.251, C:V.252 Hydrogen bonds: D:V.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

KAVANAGH, K.L. et al., The structure of wild-type human HADH2 (17beta-hydroxysteroid dehydrogenase type 10) bound to NAD+ at 1.2 A. To be Published

Release Date

2006-12-12

Peptides

HADH2 protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

HADH2 protein