- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 56 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: D.466, K.467
Ligand excluded by PLIPSO4.3: 1 residues within 4Å:- Chain A: R.169
Ligand excluded by PLIPSO4.4: 2 residues within 4Å:- Chain A: R.251, P.256
Ligand excluded by PLIPSO4.5: 2 residues within 4Å:- Chain A: R.379, Y.414
Ligand excluded by PLIPSO4.6: 8 residues within 4Å:- Chain A: F.490, F.495, G.496, K.497
- Chain B: K.284, L.508, R.509, I.510
Ligand excluded by PLIPSO4.7: 8 residues within 4Å:- Chain A: K.284, L.508, R.509, I.510
- Chain B: F.490, F.495, G.496, K.497
Ligand excluded by PLIPSO4.8: 2 residues within 4Å:- Chain A: R.166, R.169
Ligand excluded by PLIPSO4.9: 2 residues within 4Å:- Chain A: N.163
- Chain B: Q.143
Ligand excluded by PLIPSO4.10: 4 residues within 4Å:- Chain A: T.60, N.353, E.356, R.396
Ligand excluded by PLIPSO4.14: 2 residues within 4Å:- Chain B: D.466, K.467
Ligand excluded by PLIPSO4.15: 2 residues within 4Å:- Chain B: R.251, P.256
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain B: R.379, Y.414
Ligand excluded by PLIPSO4.17: 2 residues within 4Å:- Chain B: R.166, R.169
Ligand excluded by PLIPSO4.18: 2 residues within 4Å:- Chain A: Q.143
- Chain B: N.163
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain B: T.60, N.353, E.356, R.396
Ligand excluded by PLIPSO4.23: 2 residues within 4Å:- Chain C: D.466, K.467
Ligand excluded by PLIPSO4.24: 1 residues within 4Å:- Chain C: R.169
Ligand excluded by PLIPSO4.25: 2 residues within 4Å:- Chain C: R.251, P.256
Ligand excluded by PLIPSO4.26: 2 residues within 4Å:- Chain C: R.379, Y.414
Ligand excluded by PLIPSO4.27: 8 residues within 4Å:- Chain C: F.490, F.495, G.496, K.497
- Chain D: K.284, L.508, R.509, I.510
Ligand excluded by PLIPSO4.28: 8 residues within 4Å:- Chain C: K.284, L.508, R.509, I.510
- Chain D: F.490, F.495, G.496, K.497
Ligand excluded by PLIPSO4.29: 2 residues within 4Å:- Chain C: R.166, R.169
Ligand excluded by PLIPSO4.30: 2 residues within 4Å:- Chain C: N.163
- Chain D: Q.143
Ligand excluded by PLIPSO4.31: 4 residues within 4Å:- Chain C: T.60, N.353, E.356, R.396
Ligand excluded by PLIPSO4.35: 2 residues within 4Å:- Chain D: D.466, K.467
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain D: R.251, P.256
Ligand excluded by PLIPSO4.37: 2 residues within 4Å:- Chain D: R.379, Y.414
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain D: R.166, R.169
Ligand excluded by PLIPSO4.39: 2 residues within 4Å:- Chain C: Q.143
- Chain D: N.163
Ligand excluded by PLIPSO4.40: 4 residues within 4Å:- Chain D: T.60, N.353, E.356, R.396
Ligand excluded by PLIPSO4.44: 2 residues within 4Å:- Chain E: R.251, P.256
Ligand excluded by PLIPSO4.45: 2 residues within 4Å:- Chain E: R.379, Y.414
Ligand excluded by PLIPSO4.46: 8 residues within 4Å:- Chain E: K.284, L.508, R.509, I.510
- Chain F: F.490, F.495, G.496, K.497
Ligand excluded by PLIPSO4.47: 2 residues within 4Å:- Chain E: R.166, R.169
Ligand excluded by PLIPSO4.48: 3 residues within 4Å:- Chain E: N.163
- Chain F: K.135, Q.143
Ligand excluded by PLIPSO4.49: 4 residues within 4Å:- Chain C: K.30
- Chain E: T.60, N.353, R.396
Ligand excluded by PLIPSO4.50: 4 residues within 4Å:- Chain C: L.31, T.32
- Chain E: K.30, R.357
Ligand excluded by PLIPSO4.54: 2 residues within 4Å:- Chain F: D.466, K.467
Ligand excluded by PLIPSO4.55: 2 residues within 4Å:- Chain F: R.251, P.256
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain F: R.379, Y.414
Ligand excluded by PLIPSO4.57: 8 residues within 4Å:- Chain E: F.490, F.495, G.496, K.497
- Chain F: K.284, L.508, R.509, I.510
Ligand excluded by PLIPSO4.58: 2 residues within 4Å:- Chain F: R.166, R.169
Ligand excluded by PLIPSO4.59: 3 residues within 4Å:- Chain F: T.60, N.353, R.396
Ligand excluded by PLIPSO4.63: 2 residues within 4Å:- Chain G: R.251, P.256
Ligand excluded by PLIPSO4.64: 2 residues within 4Å:- Chain G: R.379, Y.414
Ligand excluded by PLIPSO4.65: 8 residues within 4Å:- Chain G: K.284, L.508, R.509, I.510
- Chain H: F.490, F.495, G.496, K.497
Ligand excluded by PLIPSO4.66: 2 residues within 4Å:- Chain G: R.166, R.169
Ligand excluded by PLIPSO4.67: 3 residues within 4Å:- Chain G: N.163
- Chain H: K.135, Q.143
Ligand excluded by PLIPSO4.68: 4 residues within 4Å:- Chain A: K.30
- Chain G: T.60, N.353, R.396
Ligand excluded by PLIPSO4.69: 4 residues within 4Å:- Chain A: L.31, T.32
- Chain G: K.30, R.357
Ligand excluded by PLIPSO4.73: 2 residues within 4Å:- Chain H: D.466, K.467
Ligand excluded by PLIPSO4.74: 2 residues within 4Å:- Chain H: R.251, P.256
Ligand excluded by PLIPSO4.75: 2 residues within 4Å:- Chain H: R.379, Y.414
Ligand excluded by PLIPSO4.76: 8 residues within 4Å:- Chain G: F.490, F.495, G.496, K.497
- Chain H: K.284, L.508, R.509, I.510
Ligand excluded by PLIPSO4.77: 2 residues within 4Å:- Chain H: R.166, R.169
Ligand excluded by PLIPSO4.78: 3 residues within 4Å:- Chain H: T.60, N.353, R.396
Ligand excluded by PLIP- 8 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.11: 30 residues within 4Å:- Chain A: V.185, I.186, P.187, W.188, N.189, M.194, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.1
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:P.187, A:T.264
- Hydrogen bonds: A:I.186, A:K.212, A:Q.215, A:G.245, A:Q.250, A:S.266, A:L.289, A:G.291, A:E.419
- Water bridges: A:V.216, A:S.246, A:Q.250, A:S.253, A:S.266, A:T.267
- Salt bridges: A:K.212
NAP.20: 30 residues within 4Å:- Chain B: V.185, I.186, P.187, W.188, N.189, M.194, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.13
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:P.187, B:T.264
- Hydrogen bonds: B:I.186, B:K.212, B:Q.215, B:G.245, B:Q.250, B:S.266, B:E.288, B:L.289, B:G.291, B:E.419
- Water bridges: B:Q.215, B:Q.215, B:S.246, B:S.253, B:T.267
- Salt bridges: B:K.212
NAP.32: 30 residues within 4Å:- Chain C: V.185, I.186, P.187, W.188, N.189, M.194, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.22
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:P.187, C:T.264
- Hydrogen bonds: C:I.186, C:K.212, C:Q.215, C:G.245, C:Q.250, C:S.266, C:E.288, C:L.289, C:G.291, C:E.419
- Water bridges: C:V.216, C:S.246, C:Q.250, C:S.253, C:S.266, C:T.267
- Salt bridges: C:K.212
NAP.41: 30 residues within 4Å:- Chain D: V.185, I.186, P.187, W.188, N.189, M.194, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.34
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:P.187, D:T.264
- Hydrogen bonds: D:I.186, D:K.212, D:Q.215, D:G.245, D:Q.250, D:S.266, D:L.289, D:G.291, D:E.419
- Water bridges: D:Q.215, D:Q.215, D:S.246, D:S.253, D:T.267
- Salt bridges: D:K.212
NAP.51: 30 residues within 4Å:- Chain E: V.185, I.186, P.187, W.188, N.189, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, G.291, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.43
22 PLIP interactions:22 interactions with chain E- Hydrophobic interactions: E:P.187, E:T.264
- Hydrogen bonds: E:I.186, E:K.212, E:Q.215, E:G.245, E:Q.250, E:S.266, E:E.288, E:L.289, E:G.291, E:E.419
- Water bridges: E:Q.215, E:V.216, E:S.246, E:S.253, E:T.267, E:S.276, E:E.419, E:E.419, E:D.498
- Salt bridges: E:K.212
NAP.60: 29 residues within 4Å:- Chain F: V.185, I.186, P.187, W.188, N.189, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.53
21 PLIP interactions:21 interactions with chain F- Hydrophobic interactions: F:P.187, F:T.264
- Hydrogen bonds: F:I.186, F:K.212, F:Q.215, F:G.245, F:Q.250, F:S.266, F:L.289, F:G.291, F:E.419
- Water bridges: F:Q.215, F:Q.215, F:V.216, F:S.246, F:S.253, F:T.267, F:S.276, F:E.419, F:E.419
- Salt bridges: F:K.212
NAP.70: 30 residues within 4Å:- Chain G: V.185, I.186, P.187, W.188, N.189, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, G.291, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.62
19 PLIP interactions:19 interactions with chain G- Hydrophobic interactions: G:P.187, G:T.264
- Hydrogen bonds: G:I.186, G:K.212, G:Q.215, G:G.245, G:Q.250, G:S.266, G:L.289, G:G.291, G:E.419
- Water bridges: G:Q.215, G:V.216, G:S.246, G:S.253, G:T.267, G:S.276, G:E.419
- Salt bridges: G:K.212
NAP.79: 29 residues within 4Å:- Chain H: V.185, I.186, P.187, W.188, N.189, K.212, A.214, Q.215, S.244, G.245, S.246, G.249, Q.250, F.263, T.264, G.265, S.266, V.269, H.272, I.273, E.288, L.289, G.290, C.322, E.419, F.421, L.449, F.487
- Ligands: MG.72
21 PLIP interactions:21 interactions with chain H- Hydrophobic interactions: H:P.187, H:T.264
- Hydrogen bonds: H:I.186, H:K.212, H:Q.215, H:G.245, H:Q.250, H:S.266, H:E.288, H:L.289, H:G.291, H:E.419
- Water bridges: H:Q.215, H:Q.215, H:V.216, H:S.246, H:S.253, H:T.267, H:S.276, H:E.419
- Salt bridges: H:K.212
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 9 residues within 4Å:- Chain A: Y.190, M.193, W.197, F.316, N.321, C.322, I.323, N.479, T.481
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.190, A:N.321
- Water bridges: A:T.481, A:T.481
GOL.21: 8 residues within 4Å:- Chain B: Y.190, M.193, W.197, F.316, N.321, I.323, N.479, T.481
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.321, B:T.481
GOL.33: 9 residues within 4Å:- Chain C: Y.190, M.193, W.197, F.316, N.321, C.322, I.323, N.479, T.481
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.321
- Water bridges: C:T.481, C:T.481
GOL.42: 8 residues within 4Å:- Chain D: Y.190, M.193, W.197, F.316, N.321, I.323, N.479, T.481
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.321
GOL.52: 8 residues within 4Å:- Chain E: Y.190, M.193, W.197, F.316, N.321, I.323, N.479, T.481
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:N.479
- Water bridges: E:N.479, E:T.481, E:T.481, E:T.481
GOL.61: 8 residues within 4Å:- Chain F: T.136, Y.190, M.193, W.197, F.316, N.321, N.479, T.481
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:N.321, F:N.321
- Water bridges: F:T.136, F:N.479, F:T.481
GOL.71: 8 residues within 4Å:- Chain G: Y.190, M.193, W.197, F.316, N.321, I.323, N.479, T.481
7 PLIP interactions:7 interactions with chain G- Hydrogen bonds: G:Y.190, G:N.321, G:N.479, G:T.481
- Water bridges: G:T.481, G:T.481, G:T.481
GOL.80: 8 residues within 4Å:- Chain H: T.136, Y.190, M.193, W.197, F.316, N.321, N.479, T.481
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:N.321, H:N.321
- Water bridges: H:T.136, H:N.479, H:T.481
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tsybovsky, Y. et al., Crystal structures of the carboxyl terminal domain of rat 10-formyltetrahydrofolate dehydrogenase: implications for the catalytic mechanism of aldehyde dehydrogenases. Biochemistry (2007)
- Release Date
- 2007-03-06
- Peptides
- Formyltetrahydrofolate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 56 x SO4: SULFATE ION(Non-functional Binders)
- 8 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tsybovsky, Y. et al., Crystal structures of the carboxyl terminal domain of rat 10-formyltetrahydrofolate dehydrogenase: implications for the catalytic mechanism of aldehyde dehydrogenases. Biochemistry (2007)
- Release Date
- 2007-03-06
- Peptides
- Formyltetrahydrofolate dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D