SMTL ID : 2o3h.1

Crystal structure of the human C65A Ape

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x SM: SAMARIUM (III) ION(Non-covalent)

SM.1: 2 residues within 4Å: Chain A: E.183, E.184 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.183, A:E.183, A:E.184, H2O.1, H2O.6 SM.2: 2 residues within 4Å: Chain A: D.37, E.63 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.63, A:E.63, H2O.7, H2O.8, H2O.11

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: L.71, A.73, Q.76 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.73 Water bridges: A:L.71, A:L.71, A:Q.76 ACT.4: 3 residues within 4Å: Chain A: N.239, R.241, S.242 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.239, A:R.241, A:S.242 ACT.5: 2 residues within 4Å: Chain A: M.4, A.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.4 Water bridges: A:A.5 ACT.6: 4 residues within 4Å: Chain A: E.63, Y.95, S.96, Y.138 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.95 Hydrogen bonds: A:S.96 Salt bridges: A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Georgiadis, M.M. et al., Evolution of the redox function in mammalian apurinic/apyrimidinic endonuclease. Mutat.Res. (2008)

Release Date

2007-12-11

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase