SMTL ID : 2o3j.2 (2 other biounits)

Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.85, E.86, A.87, D.88, G.127, P.128, K.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.85, A:D.88, A:P.128, A:K.129 Water bridges: A:P.128 GOL.2: 8 residues within 4Å: Chain A: V.426, E.427, Y.430, L.450, D.451, A.454, L.455, I.458 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.427, A:E.427 Water bridges: A:Y.430, A:D.451 GOL.3: 5 residues within 4Å: Chain A: E.190, S.191, N.219, T.220, W.221 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.191, A:S.191 Water bridges: A:E.190, A:E.190, A:E.190, A:T.220, B:G.252 GOL.4: 7 residues within 4Å: Chain B: V.426, E.427, Y.430, L.450, D.451, A.454, I.458 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.451 GOL.5: 6 residues within 4Å: Chain B: G.189, E.190, S.191, N.219, T.220, W.221 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.191, B:T.220, B:T.220 GOL.6: 6 residues within 4Å: Chain A: R.267 Chain B: F.169, L.170, K.227, N.231, F.284 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.267, B:L.170, B:L.170, B:K.227, B:K.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Crystal Structure of Caenorhabditis Elegans Udp-Glucose Dehydrogenase. To be Published

Release Date

2006-12-12

Peptides

UDP-glucose 6-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

UDP-glucose 6-dehydrogenase

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