SMTL ID : 2o52.1 (1 other biounit)

Crystal structure of human RAB4B in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.39, D.80 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.39, H2O.1, H2O.1, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 18 residues within 4Å: Chain A: S.33, A.34, G.35, T.36, G.37, K.38, S.39, C.40, E.85, N.138, K.139, D.141, L.142, S.168, A.169, L.170 Ligands: MG.1, BME.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.35, A:T.36, A:G.37, A:K.38, A:S.39, A:C.40, A:E.85, A:N.138, A:K.139, A:K.139, A:S.168, A:A.169, A:L.170 Water bridges: A:S.39, A:S.39, A:S.39, A:T.81, A:E.85, A:E.85 Salt bridges: A:K.38, A:D.141

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 4 residues within 4Å: Chain A: C.40, A.169, L.170 Ligands: GDP.2 No protein-ligand interaction detected (PLIP)

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 2 residues within 4Å: Chain A: S.93, R.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Crystal structure of human RAB4B in complex with GDP. To be Published

Release Date

2006-12-19

Peptides

Ras-related protein Rab-4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-4B

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