SMTL ID : 2o5z.3 (2 other biounits)

Crystal structure of the 1E9 LeuH47Trp/ArgH100Trp Fab 5-beta-androstane-3,17-dione complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

46 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: Y.27, M.28, Y.32 Chain B: Y.27, M.28, Y.32 Ligands: SO4.15 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: Q.177, S.178 Chain C: K.112 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: V.2, R.98, Y.108 Chain B: M.28, N.31 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: N.88, S.118, S.119 Chain C: R.113, A.116 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: D.214, K.215, K.216 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: K.123, G.124 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: E.16, T.17 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: R.67, K.87, E.89 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: S.167, G.168 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: K.87, N.88, E.89 Ligand excluded by PLIP SO4.11: 1 residues within 4Å: Chain A: Q.82 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: E.73, T.74, S.75 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain A: S.7, G.8 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain A: Y.27, M.28, Y.32 Chain B: Y.27, M.28, Y.32 Ligands: SO4.1 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain B: Q.177, S.178 Chain D: K.112 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain A: M.28, N.31 Chain B: V.2, R.98, Y.108 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain B: N.88, S.118, S.119 Chain D: R.113, A.116 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: D.214, K.215, K.216 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: K.123, G.124 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: E.16, T.17 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: R.67, K.87, E.89 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain B: S.167, G.168 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: K.87, N.88, E.89 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain B: Q.82 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain B: E.73, T.74, S.75 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain B: S.7, G.8 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain C: P.8, L.9, S.10 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain C: Q.27, S.28 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain C: S.57, N.58, R.59 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain C: H.98, F.99 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain A: K.13, S.121 Chain C: S.207 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain C: P.64, R.66, E.86 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain C: Q.47, S.48, K.50 Ligand excluded by PLIP SO4.36: 1 residues within 4Å: Chain C: R.216 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain C: N.143, D.175 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain C: S.119, N.142, N.143 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain D: P.8, L.9, S.10 Ligand excluded by PLIP SO4.40: 2 residues within 4Å: Chain D: Q.27, S.28 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain D: S.57, N.58, R.59 Ligand excluded by PLIP SO4.42: 2 residues within 4Å: Chain D: H.98, F.99 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain B: K.13, S.121 Chain D: S.207 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain D: P.64, R.66, E.86 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain D: Q.47, S.48, K.50 Ligand excluded by PLIP SO4.46: 1 residues within 4Å: Chain D: R.216 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain D: N.143, D.175 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain D: S.119, N.142, N.143 Ligand excluded by PLIP

2 x ANO: 5-BETA-ANDROSTANE-3,17-DIONE(Non-covalent)

ANO.14: 5 residues within 4Å: Chain A: N.35, W.50, G.99, T.101, W.104 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.50, A:T.101, A:W.104 Hydrogen bonds: A:N.35 ANO.28: 5 residues within 4Å: Chain B: N.35, W.50, G.99, T.101, W.104 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.50, B:T.101, B:W.104 Hydrogen bonds: B:N.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdino, P. et al., Closely related antibody receptors exploit fundamentally different strategies for steroid recognition. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2007-12-18

Peptides

chimeric antibody Fab 1E9-DB3: AB
chimeric antibody Fab 1E9-DB3: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
H

C
L

D
L

chimeric antibody Fab 1E9-DB3

chimeric antibody Fab 1E9-DB3

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