SMTL ID : 2o63.1

Crystal structure of Pim1 with Myricetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 7 residues within 4Å: Chain A: F.102, I.105, T.106, D.142, D.206, G.210, D.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.211 IMD.2: 7 residues within 4Å: Chain A: F.21, D.100, E.143, N.144, I.157, D.158 Ligands: MYC.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.158 Water bridges: A:D.158 IMD.3: 3 residues within 4Å: Chain A: H.191, R.193, S.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.193, A:S.194 Water bridges: A:G.192, A:R.193 pi-Cation interactions: A:H.191

1 x MYC: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)

MYC.4: 16 residues within 4Å: Chain A: L.16, F.21, V.24, A.37, K.39, I.76, L.92, E.93, R.94, P.95, E.96, V.98, L.146, I.157, D.158 Ligands: IMD.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.16, A:V.24, A:R.94, A:I.157, A:I.157 Hydrogen bonds: A:E.93, A:P.95, A:D.158 Water bridges: A:V.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holder, S. et al., Characterization of a potent and selective small-molecule inhibitor of the PIM1 kinase. Mol.Cancer Ther. (2007)

Release Date

2007-02-13

Peptides

Proto-oncogene serine/threonine-protein kinase Pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase Pim-1

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