- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-10-mer
- Ligands
- 12 x CA: CALCIUM ION(Non-covalent)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
INI.3: 15 residues within 4Å:- Chain A: A.20, F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
- Chain E: N.115, F.140
9 PLIP interactions:1 interactions with chain E, 8 interactions with chain A- Hydrogen bonds: E:N.115, A:Y.23, A:P.51, A:A.53, A:L.54, A:T.82, A:I.84
- Water bridges: A:T.82
- pi-Stacking: A:F.22
INI.5: 15 residues within 4Å:- Chain A: N.115, F.140, A.144
- Chain B: F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:A.53, B:L.54, B:T.82, B:I.84, A:N.115
- Water bridges: B:T.82
- pi-Stacking: B:F.22
INI.8: 16 residues within 4Å:- Chain B: G.114, N.115, F.140, A.144
- Chain C: F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:A.53, C:L.54, C:T.82, C:I.84, B:N.115
- Water bridges: C:T.82
- pi-Stacking: C:F.22
INI.10: 17 residues within 4Å:- Chain C: G.114, N.115, F.140, A.144
- Chain D: A.20, F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:Y.23, D:A.53, D:L.54, D:T.82, D:I.84, C:N.115
- Water bridges: D:E.55, C:I.113
- pi-Stacking: D:F.22
INI.11: 15 residues within 4Å:- Chain D: G.114, N.115, F.140, A.144
- Chain E: F.22, Y.23, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
10 PLIP interactions:8 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:Y.23, E:Y.23, E:A.53, E:L.54, E:T.82, E:I.84, D:N.115
- Water bridges: E:H.90, D:K.137
- pi-Stacking: E:F.22
INI.14: 15 residues within 4Å:- Chain F: A.20, F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
- Chain J: N.115, F.140
8 PLIP interactions:7 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: F:P.51, F:A.53, F:L.54, F:T.82, F:I.84, J:N.115
- Water bridges: F:T.82
- pi-Stacking: F:F.22
INI.16: 15 residues within 4Å:- Chain F: N.115, F.140, A.144
- Chain G: F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
8 PLIP interactions:7 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:Y.23, G:A.53, G:L.54, G:T.82, G:I.84, F:N.115
- Water bridges: G:T.82
- pi-Stacking: G:F.22
INI.19: 16 residues within 4Å:- Chain G: G.114, N.115, F.140, A.144
- Chain H: F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
8 PLIP interactions:7 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:Y.23, H:A.53, H:L.54, H:T.82, H:I.84, G:N.115
- Water bridges: H:T.82
- pi-Stacking: H:F.22
INI.21: 17 residues within 4Å:- Chain H: G.114, N.115, F.140, A.144
- Chain I: A.20, F.22, Y.23, P.51, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
8 PLIP interactions:6 interactions with chain I, 2 interactions with chain H- Hydrogen bonds: I:A.53, I:L.54, I:T.82, I:I.84, H:N.115
- Water bridges: I:E.55, H:I.113
- pi-Stacking: I:F.22
INI.22: 15 residues within 4Å:- Chain I: G.114, N.115, F.140, A.144
- Chain J: F.22, Y.23, G.52, A.53, L.54, E.55, T.82, V.83, I.84, H.90, V.94
9 PLIP interactions:8 interactions with chain J, 1 interactions with chain I- Hydrogen bonds: J:Y.23, J:A.53, J:L.54, J:T.82, J:I.84, I:N.115
- Water bridges: J:H.90, J:H.90
- pi-Stacking: J:F.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klinke, S. et al., Structural and Kinetic Properties of Lumazine Synthase Isoenzymes in the Order Rhizobiales. J.Mol.Biol. (2007)
- Release Date
- 2007-08-14
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase 1: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-10-mer
- Ligands
- 12 x CA: CALCIUM ION(Non-covalent)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Klinke, S. et al., Structural and Kinetic Properties of Lumazine Synthase Isoenzymes in the Order Rhizobiales. J.Mol.Biol. (2007)
- Release Date
- 2007-08-14
- Peptides
- 6,7-dimethyl-8-ribityllumazine synthase 1: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E