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SMTL ID : 2o6p.5
(4 other biounits)
Crystal Structure of the heme-IsdC complex
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.50 Å
Oligo State
homo-dimer
Ligands
6 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
1 residues within 4Å:
Chain A:
H.107
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:H.107
,
H
2
O.2
,
H
2
O.3
ZN.2:
2 residues within 4Å:
Chain A:
D.106
,
H.108
3
PLIP interactions
:
2 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:D.106
,
A:H.108
,
H
2
O.3
ZN.5:
4 residues within 4Å:
Chain A:
N.15
,
D.87
Chain B:
D.106
,
H.108
5
PLIP interactions
:
3 interactions with chain B
,
2 interactions with chain A
Metal complexes:
B:D.106
,
B:D.106
,
B:H.108
,
A:D.87
,
A:D.87
ZN.6:
1 residues within 4Å:
Chain B:
H.107
3
PLIP interactions
:
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:H.107
,
H
2
O.6
,
H
2
O.8
ZN.7:
1 residues within 4Å:
Chain B:
G.1
1
PLIP interactions
:
1 interactions with chain B
Metal complexes:
B:G.1
ZN.8:
1 residues within 4Å:
Chain B:
K.31
No protein-ligand interaction detected (PLIP)
2 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.3:
6 residues within 4Å:
Chain A:
S.55
,
I.56
,
E.57
,
G.58
,
G.88
,
K.89
Ligand excluded by PLIP
CL.9:
6 residues within 4Å:
Chain B:
S.55
,
I.56
,
E.57
,
G.58
,
G.88
,
K.89
Ligand excluded by PLIP
2 x
HEM
:
PROTOPORPHYRIN IX CONTAINING FE
(Non-covalent)
HEM.4:
14 residues within 4Å:
Chain A:
K.13
,
S.20
,
I.21
,
A.22
,
Y.25
,
W.50
,
I.51
,
I.90
,
V.92
,
I.94
,
F.103
,
Y.105
,
Y.109
,
I.111
17
PLIP interactions
:
17 interactions with chain A
,
Hydrophobic interactions:
A:Y.25
,
A:Y.25
,
A:W.50
,
A:I.51
,
A:I.90
,
A:V.92
,
A:V.92
,
A:I.94
,
A:F.103
,
A:F.103
,
A:Y.109
,
A:Y.109
,
A:Y.109
,
A:I.111
Hydrogen bonds:
A:I.21
pi-Stacking:
A:Y.109
Metal complexes:
A:Y.105
HEM.10:
13 residues within 4Å:
Chain B:
K.13
,
S.20
,
I.21
,
A.22
,
Y.25
,
W.50
,
I.51
,
I.90
,
V.92
,
I.94
,
Y.105
,
Y.109
,
I.111
16
PLIP interactions
:
16 interactions with chain B
,
Hydrophobic interactions:
B:K.13
,
B:Y.25
,
B:Y.25
,
B:W.50
,
B:I.51
,
B:I.90
,
B:V.92
,
B:V.92
,
B:I.94
,
B:Y.109
,
B:Y.109
,
B:Y.109
,
B:I.111
Hydrogen bonds:
B:I.21
pi-Stacking:
B:Y.109
Metal complexes:
B:Y.105
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Sharp, K.H. et al., Crystal structure of the heme-IsdC complex, the central conduit of the Isd iron/heme uptake system in Staphylococcus aureus. J. Biol. Chem. (2007)
Release Date
2007-02-06
Peptides
Iron-regulated surface determinant protein C:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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Fade Mismatches
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Chain
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2° Structure
Bfactor
Bfactor Range
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Entropy
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NGL
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Iron-regulated surface determinant protein C
Related Entries With Identical Sequence
2o6p.1
|
2o6p.2
|
2o6p.3
|
2o6p.4
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme