SMTL ID : 2o7d.1 (1 other biounit)

Tyrosine ammonia-lyase from Rhodobacter sphaeroides, complexed with caffeate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x DHC: CAFFEIC ACID(Non-covalent)

DHC.1: 15 residues within 4Å: Chain A: Y.60, F.66, G.67, L.86, H.89, L.90, X.149, L.151, N.430, N.433, Q.434 Chain B: M.403, G.404 Chain D: Y.298, R.301 10 PLIP interactions: 3 interactions with chain D, 7 interactions with chain A Hydrogen bonds: D:Q.295, A:Y.60, A:H.89, A:N.433 Water bridges: D:R.301, A:Y.60, A:Y.60, A:N.331 Salt bridges: D:R.301 Hydrophobic interactions: A:L.151 DHC.2: 16 residues within 4Å: Chain A: M.403, G.404 Chain B: Y.60, F.66, G.67, L.86, H.89, L.90, X.149, L.151, N.430, N.433, Q.434 Chain C: Q.295, Y.298, R.301 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:Q.295, C:Y.298, B:H.89, B:N.433, B:N.433 Water bridges: C:R.301, B:N.331 Salt bridges: C:R.301 Hydrophobic interactions: B:L.151 DHC.3: 16 residues within 4Å: Chain B: Q.295, Y.298, R.301 Chain C: Y.60, F.66, G.67, L.86, H.89, L.90, X.149, L.151, N.430, N.433, Q.434 Chain D: M.403, G.404 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:L.151 Hydrogen bonds: C:Y.60, C:H.89, C:N.433, B:Q.295 Water bridges: C:Y.60, C:Y.60, C:N.331, B:R.301 Salt bridges: B:R.301 DHC.4: 16 residues within 4Å: Chain A: Y.298, R.301 Chain C: M.403, G.404, V.407 Chain D: Y.60, F.66, G.67, L.86, H.89, L.90, X.149, L.151, N.430, N.433, Q.434 10 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C, 5 interactions with chain D Hydrogen bonds: A:Y.298, D:H.89, D:N.433 Water bridges: A:Q.295, A:R.301, D:Y.60, D:N.331 Salt bridges: A:R.301 Hydrophobic interactions: C:V.407, D:L.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Louie, G.V. et al., Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases. Chem.Biol. (2006)

Release Date

2007-01-16

Peptides

Putative histidine ammonia-lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative histidine ammonia-lyase

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